FMO06306.5prime Sequence
1149 bp (1040 high quality bases) assembled on 2008-09-15
> FMO06306.5prime
CAGTCGACATGCAGCGCCAGAAACCCAAGGGACCCGGCAAACCGGGTTCG
CGCTTCAAGCCGGGATCCGGCACGTTCAAAGGAGCTGGTGGTGGCCGGAA
AAGCGGCGACAACAGCCAGAAGCGTCCGCGCCAGGAGATCAACAAGTCGC
GACTGGCCGCCACCGAAGCGGAGATCCAGGACCTCAAGACCAAATACGCA
GAGATCGATGCTACTGCCATTAAGAAGTTCGCCCAGTTTCCGCTGTCCAA
GAAGACCCAAAAGGCACTGGCGGAGTCCAAATTCGTGCATCCCACGCAGG
TGCAGCGGGACAGCATTGGACCCGCACTGCAGGGCAAGGATGTGCTGGGC
GCGGCCATCACAGGCAGTGGCAAGACACTGGCCTTTCTCATACCCGTTCT
GGAGCATCTGTTCATGAACAAATGGTCGCGCACCGATGGCGTTGGCGCTA
TCATCATCTCGCCCACCCGCGAGCTAGCCTACCAGATCTTCGAGACCCTA
AAGAAGGTGGGAAAGCACCACGACTTCTCCGCCGGCCTCATCATCGGAGG
CAAGAACCTGAAGTTCGAGCGCACTCGCATGGACCAGTGCAACATACTGA
TCTGCACACCCGGAAGGCTGCTGCAGCACATGGACGAGAATCCTCTCTTT
AATACGAGCACCATGGAGATGTTGGTCCTGGATGAAGCCGATCGCTGTTT
GGATATGGGTTTCCAGAAGACCCTGAATTCAATCATAGAAAATTTCCCAC
CAGTGCGTCAAACGCTGCTATTCTCGGCCACGCAAACGAATACGGTGCAG
GATTTGGCGAGGCTTAATCTAAAGGATCCGGTCTACGTAGGCTACGGAGG
AGCGACGCCAAGAGAAGAGCCCAGCGCCAGCACGAAGAAGACTCCGAACA
CAGCTGTCTTGGCAGTTCCTGAGCTTTTGCAGCGAGTTATGTGGTGTTGA
ACCTGGAGGACAGATCACCATGCTGTGTCGTCATCAGAACCATTTGAAGC
AGAAGATCATGTGTTCGTGGCCAGTTGCAGCAGCCAGTACCTGTAACAAG
ATTTTTTGTAACCTGCGGCCGGTAGCCGCTGCCTGACTCTCTATGGAACG
CTCCATCAGGATCGCCATTGGCATCTACAAGGATTTCTTCCCAAGGACC
FMO06306.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5800-RA | 2647 | CG5800-RA | 88..1236 | 9..1145 | 5235 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17636831..17637583 | 396..1137 | 2995 | 96.6 | Plus |
| X | 23542271 | X | 17636368..17636756 | 9..397 | 1930 | 99.7 | Plus |
Blast to na_te.dros performed 2014-11-28 19:44:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1038..1161 | 69..186 | 136 | 62.4 | Plus |
FMO06306.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:31 Download gff for
FMO06306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-RA | 80..1231 | 1..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:08 Download gff for
FMO06306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-RA | 78..1229 | 1..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:50 Download gff for
FMO06306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-RA | 80..1231 | 1..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:50 Download gff for
FMO06306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17636360..17636754 | 1..395 | 98 | -> | Plus |
| X | 17636831..17637587 | 396..1140 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:31 Download gff for
FMO06306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17530864..17531620 | 396..1140 | 97 | | Plus |
| arm_X | 17530393..17530787 | 1..395 | 98 | -> | Plus |
