FMO06308.5prime Sequence
1165 bp (1029 high quality bases) assembled on 2008-09-15
> FMO06308.5prime
CAGTCGACATGTCCAACGGTCGTTACGGGAGGTTCGGAGCACTCATCGGC
GTCGCCTGCGTGAGCAGCACCCACTGCCGCTTTCTGATATACTCAACGAA
AAATGCCGAGGTCCTGGCCTACCATGAGCTGAAGCTGCGACAGATTGTCC
ACCAGGCGGGCTGGATGGAGTACGATCCGTCGGAGATATGGAAGAACACA
CAGGAGTGCATAGAGACCGCCTATAAGAACCTGGTTATACTAGAGATCAA
TCCACGTGATATTATTGCCATCGGTATCGTAAATCAGCGGGGCACCTCGG
TGTTATGGAATTTGGAGACGGGACAGCCACTGCACAATGCCATCGGATGG
TCAGATTGCCGTAGCACTCCCATCCTAAAGACCCTGCTCCATAATGTCCG
GCACAATGTGGACTACGTGAGGTATCGCAGTGGCTTGCCCCTGAGCAGCT
GTTTCAGTGCCCTAAAGATCCGTTGGCTAATGGATCACGTTCCTGCCGTA
GCCACTGCCATTGAGGAGAACAAGTGCTTATTCGGCACCTTGGACTCCTG
GCTTCTGTGGAACCTAACCGGCGGCGTTGAGATGGGTGTGCACTCTACTG
ACATTACCAATGCCCACTACACTTCCCTTATGAACGTGTCCACAGAGCAG
TGGGATCCTAAACTCTGCCAGTTCTTTCGATTGCCCCTGAACATACTGCC
ACGCATACGATCCAACTCCGAAATCTTCGGCTATGTGCTGGAGGGTCCTT
TGCATGGCACTCCCATAGCGGCCATGATGGGTGAGCAGCCCGCAAGTTTG
TTGGGCCACTCTGCGTGAAGGCCGGGCAAAATGTCTGTACCCTGGACGAC
AGCTGTTTCGTGCTCCTTAACACGGGCAGGGAGAAGCTGGACTCTGCAAA
CGGGACTGATAACGGGCATAGCGCACAAGCTGGGCGAAAAAGCGGCCACT
AACTAAACACTCGAGGGAGCCATTTCAATGCCGGTTCCACGGTACATGGC
TGCGGGAATAAGCTACGAATCAATACTGAAATTATTCCAATGATATGTGG
TGGAGTCTTGAATAATCATCGGCGAAACTCATGAACCCGTCCCTTGTCCC
TCATCCAGGCTGAATGCTGTGTGAACTGCCACCAAAAGTTCGAGAAATAC
GTTGTCCTGCATTCA
FMO06308.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8298-RC | 2978 | CG8298-RC | 120..1237 | 9..1117 | 5140 | 98 | Plus |
| CG8298-RA | 2069 | CG8298-RA | 120..1237 | 9..1117 | 5140 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11989565..11990413 | 214..1059 | 3845 | 98.7 | Plus |
| 2R | 25286936 | 2R | 11989381..11989510 | 86..215 | 650 | 100 | Plus |
| 2R | 25286936 | 2R | 11989250..11989327 | 9..86 | 375 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:57:22 has no hits.
FMO06308.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:41 Download gff for
FMO06308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8298-RA | 120..1203 | 9..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:12 Download gff for
FMO06308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8298-RA | 118..1201 | 9..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:34 Download gff for
FMO06308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8298-RA | 120..1203 | 9..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:34 Download gff for
FMO06308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11989382..11989510 | 87..215 | 100 | -> | Plus |
| 2R | 11989250..11989327 | 9..86 | 98 | -> | Plus |
| 2R | 11989567..11990443 | 216..1084 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:41 Download gff for
FMO06308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7876887..7877015 | 87..215 | 100 | -> | Plus |
| arm_2R | 7876755..7876832 | 9..86 | 98 | -> | Plus |
| arm_2R | 7877072..7877948 | 216..1084 | 98 | | Plus |
