FMO06309.5prime Sequence
1148 bp (1036 high quality bases) assembled on 2008-09-15
> FMO06309.5prime
CAGTCGACATGACTCTGCCCCGCTTAGAAACTCCGCTCAGGCGGTCCGCA
GTAGGCAGTTACCAGGAGGGGGTGTCCCGCATGCTAACCCCCTTTAACGA
CGACGAGGCGGAAAGGCGGGAAGCCCGACGTCGCACGCTCCTTCAGCAGC
ATCACCGGTCGAGCACTCTGGAGTCCATCGAGGACAATGAGACCATCAAA
AATTGCTTGGAGCTCTACAATGGCAACAAGGTGAGCAAGGACAACGCCTG
GAACCTGATGCTCATCGATTCGTTGGCCAATTTGCTGGATCACCATCACA
AGCGCATGAGCAACTTCAAGATGGCTGGTTCCTCTTTAGAAGCCTCTTCC
AAGGTTTACGGCCTGCGTGTGGACTCCATCTACTTGGACGCCATGCGCAT
TTCAGCTGGCTTGAGTGCACGAACTCTTACGGATAAGCAAATAAATGCTG
CCGAGGATGATGATGGCCCCCAAGGTGAACAGGCTACTGGCGAGGGTCAG
GACTCAGCGCAACAGGCAGCAAAAGAAGCAGCACCGAAGCCCAAACGGCA
AAAGAAACCCATATCCACCGTGACCAAAAACAGAGAAACGCTGAACAGCC
GGCTGGATACGGCTCCCTTGCAGGATCCTGTGTTTGGCAAGCTGAACTCC
ACTGTGGGCTCTATAAATGCTTCCAATCGTCTGATGCACAACATTCTTCC
TAGTTTCGACTCTGAATTGCGCTTGCGTACCACCTACAATTTTTGGAACA
GCGAAGAGTCCACCGAGGAGGTCCAGGACCACACTACACTCAATGCAGAA
ATGGAACAATGGCCAGCCACATCACTTATGAGCACCAATCTTATGCGCAA
ACTGCTGCCACATGCTGAAAGGTCAAATCTGCGACCGCTGCATACGGGCT
ACATCATCACAAGTGCTCCCAATCCCAAGTCGGCAAATGAAAGGCCGCCG
AGGTAGTGCAGGATGAGATCATGACGAGGGTCTGAAAATGCCGACGATAT
GTGTGTAATGAAGATTCATGGCTTTGAATCAATGCCGAGTGTGGGCCCAT
GCCGACCTGATGGACCACGGCCTCTGGTGCCTGGAGGGGACTCATGACTG
AAGAGCTCACATGCTAGGAACATTGGGATCATATGCCGTCGCTCCGTA
FMO06309.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| barr-RC | 2908 | CG10726-RC | 479..1593 | 9..1110 | 5135 | 98.2 | Plus |
| barr-RB | 2684 | CG10726-RB | 255..1369 | 9..1110 | 5135 | 98.2 | Plus |
| barr-RA | 2580 | CG10726-RA | 151..1265 | 9..1110 | 5135 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20059584..20060354 | 1080..319 | 3350 | 98.1 | Minus |
| 2L | 23513712 | 2L | 20060408..20060723 | 324..9 | 1565 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:43:27 has no hits.
FMO06309.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:59 Download gff for
FMO06309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barr-RA | 151..1254 | 9..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:13 Download gff for
FMO06309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barr-RB | 250..1356 | 2..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:25 Download gff for
FMO06309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barr-RA | 151..1254 | 9..1100 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:25 Download gff for
FMO06309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20060412..20060726 | 2..320 | 98 | | Minus |
| 2L | 20059561..20060352 | 321..1100 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:59 Download gff for
FMO06309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20059561..20060352 | 321..1100 | 97 | <- | Minus |
| arm_2L | 20060412..20060726 | 2..320 | 98 | | Minus |
