Clone FMO06311 Report

Search the DGRC for FMO06311

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:63
Well:11
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12011-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06311.5prime Sequence

446 bp (-75 high quality bases) assembled on 2008-09-15

> FMO06311.5prime
AAAGACGAAGTTATCAGTCGACATGCATTCTCTACGACTCCTGGTTCTTC
TTGGTGTTCTGATGGCCACTCAGGGCAGAGTTCTAGAACAGGACAAGGCT
CCGGAGGTTGTCGCTTCACCTCAAGAAATCAAACCCAACGTGGAGGTCAA
GCAGGAAGTTGCCAATAAAGTGCGGGAAACCCAGCCGCAGCTGGGTGGCG
CTGTCATCTCCCAAGGCCAATCTTCTGCAGCTATCGATCAGGTTGGTGTG
AAGGAGGGTCAAGATCAGGTGGCGAACTCCACAACTCCTGATGTCCAGGA
AAGCCAACGCGAAGGGGTTTCTTTCGTCGAAGTGACTAAAGAATACCAGG
AAGCACATGCCCCACTGAGTAAGGTCGTCAGTAGCCCATTAGCCCCAGCG
ATAGCCGAGGAAAAGCAGCCCACTTCCAATGAGATACCCAAGGACC

FMO06311.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12011-RA 1724 CG12011-RA 25..449 22..446 2110 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1694716..1695137 25..446 2095 99.8 Plus
Blast to na_te.dros performed 2014-11-28 21:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 3939..3988 60..106 108 72 Plus
TART-C 11124 TART-C TARTC 11124bp 5392..5441 60..106 108 72 Plus

FMO06311.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:52 Download gff for FMO06311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12011-RA 21..449 14..446 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:56 Download gff for FMO06311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12011-RA 19..447 14..446 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:49 Download gff for FMO06311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12011-RA 21..449 14..446 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:49 Download gff for FMO06311.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1694707..1695137 14..446 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:52 Download gff for FMO06311.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1694707..1695137 14..446 98   Plus