Clone FMO06313 Report

Search the DGRC for FMO06313

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:63
Well:13
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06313.5prime Sequence

1150 bp (997 high quality bases) assembled on 2008-09-15

> FMO06313.5prime
CAGTCGACATGCTCAGTGCGCAACAAGAGATCGATCGAGGAAGACGCCCT
GCAAACAAAGAACATCAATTTACAGCACCGCCACCAAGACTCAGGCGCAG
CTCCACCAAGATGACATCACGGACGCGCCACTGTGCCCGACTGGGGATCG
TTCTCCTTGGGATCTGTTGCATCGCCAGCGGAATTTACCTCTTCCGCAAC
TGGATCGATATGTTTACACGCATGCGCGGCCAGGAAATGGCCCTGAGCCC
CAATTCACGATCATTCGAGGGCTGGAAGGTGTCGCCGCTGCCTTTAGACT
TCGATATATATCTATTTAACTGGACCAATCCAGATGACTTCTATGTGGGA
TCGAACAAGAAGCCACACTTTGAGCAACTGGGACCCTATCGGTTTCGAGA
GAAACCCGATAAGGTGGACATCGAATGGCACAATCATAACGCCTCCGTAT
CATTTCACAAAAAGTCCTGGTTCTACTTTGATGCTGCCGGCAGCAACGGA
AGTTTATGGGATAAAGTGACTACGGTCAACAGCGTAACGCACTCTGCTGC
TAGACGTGCGGCCGTCGACTGGTTTGCCAGAACTGGCGTTAACATTGCCA
ATAAATTATATAGACAGGGAGTGACCATTACGAAAACAGTTGATGAAATG
CTTTTCAAGGGCTACGAGCATCCATTCATAAGCGTGGGCAAGCTGTTGAG
ACCTCAGGATGTTCCCTACAAACGTATAGGCTACCATTACCCACGAAATG
GCAGTTCCGAGTTCGATGGTGATATCAACATGTTTACAGGAGCTGATGAT
ATCGCTAAAATGGGTCAAATTCATACGTGGAATAATTTGACGCATACTGG
AGCCTTTGAGGCCACCTGCGGGCAGTGCACCGGCTCGATGGGCGAATTCT
TTCCGCCCAATCTTGCCACCAAAGACACCGTCTACATGTACATGCCCAAG
ATGTGTCGTGCTAATACCATTGGACTACGTGGAAACTGGGACCGTGCACG
GCGTGACCGCCTACCAATTCATGGCACCCGCACGCTGTGAACAATGGCAC
TCTAATACCGATACCCGTGCTATTGGTCGGAGGAAAGTATTGCCAGCGGG
TGGATCATTCGACCTGGCCTCTTTACGCATCGCTTACGTTCTTCCGCTTT

FMO06313.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
pes-RH 2653 CG7228-RH 119..1203 8..1088 5100 98.4 Plus
pes-RG 2797 CG7228-RG 263..1347 8..1088 5100 98.4 Plus
pes-RD 2973 CG7228-RD 112..1196 8..1088 5100 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7988628..7989177 1088..543 2260 96.6 Minus
2L 23513712 2L 7989243..7989553 542..232 1540 99.7 Minus
2L 23513712 2L 7991357..7991583 234..8 1135 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:58:15 has no hits.

FMO06313.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:29 Download gff for FMO06313.5prime
Subject Subject Range Query Range Percent Splice Strand
pes-RC 379..1486 4..1107 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:17 Download gff for FMO06313.5prime
Subject Subject Range Query Range Percent Splice Strand
pes-RB 108..1215 4..1107 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:12 Download gff for FMO06313.5prime
Subject Subject Range Query Range Percent Splice Strand
pes-RD 110..1217 4..1107 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:12 Download gff for FMO06313.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7991358..7991585 4..233 99   Minus
2L 7988607..7989177 543..1107 96 <- Minus
2L 7989243..7989551 234..542 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:29 Download gff for FMO06313.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7988607..7989177 543..1107 96 <- Minus
arm_2L 7989243..7989551 234..542 99 <- Minus
arm_2L 7991358..7991585 4..233 99   Minus