FMO06313.5prime Sequence
1150 bp (997 high quality bases) assembled on 2008-09-15
> FMO06313.5prime
CAGTCGACATGCTCAGTGCGCAACAAGAGATCGATCGAGGAAGACGCCCT
GCAAACAAAGAACATCAATTTACAGCACCGCCACCAAGACTCAGGCGCAG
CTCCACCAAGATGACATCACGGACGCGCCACTGTGCCCGACTGGGGATCG
TTCTCCTTGGGATCTGTTGCATCGCCAGCGGAATTTACCTCTTCCGCAAC
TGGATCGATATGTTTACACGCATGCGCGGCCAGGAAATGGCCCTGAGCCC
CAATTCACGATCATTCGAGGGCTGGAAGGTGTCGCCGCTGCCTTTAGACT
TCGATATATATCTATTTAACTGGACCAATCCAGATGACTTCTATGTGGGA
TCGAACAAGAAGCCACACTTTGAGCAACTGGGACCCTATCGGTTTCGAGA
GAAACCCGATAAGGTGGACATCGAATGGCACAATCATAACGCCTCCGTAT
CATTTCACAAAAAGTCCTGGTTCTACTTTGATGCTGCCGGCAGCAACGGA
AGTTTATGGGATAAAGTGACTACGGTCAACAGCGTAACGCACTCTGCTGC
TAGACGTGCGGCCGTCGACTGGTTTGCCAGAACTGGCGTTAACATTGCCA
ATAAATTATATAGACAGGGAGTGACCATTACGAAAACAGTTGATGAAATG
CTTTTCAAGGGCTACGAGCATCCATTCATAAGCGTGGGCAAGCTGTTGAG
ACCTCAGGATGTTCCCTACAAACGTATAGGCTACCATTACCCACGAAATG
GCAGTTCCGAGTTCGATGGTGATATCAACATGTTTACAGGAGCTGATGAT
ATCGCTAAAATGGGTCAAATTCATACGTGGAATAATTTGACGCATACTGG
AGCCTTTGAGGCCACCTGCGGGCAGTGCACCGGCTCGATGGGCGAATTCT
TTCCGCCCAATCTTGCCACCAAAGACACCGTCTACATGTACATGCCCAAG
ATGTGTCGTGCTAATACCATTGGACTACGTGGAAACTGGGACCGTGCACG
GCGTGACCGCCTACCAATTCATGGCACCCGCACGCTGTGAACAATGGCAC
TCTAATACCGATACCCGTGCTATTGGTCGGAGGAAAGTATTGCCAGCGGG
TGGATCATTCGACCTGGCCTCTTTACGCATCGCTTACGTTCTTCCGCTTT
FMO06313.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pes-RH | 2653 | CG7228-RH | 119..1203 | 8..1088 | 5100 | 98.4 | Plus |
pes-RG | 2797 | CG7228-RG | 263..1347 | 8..1088 | 5100 | 98.4 | Plus |
pes-RD | 2973 | CG7228-RD | 112..1196 | 8..1088 | 5100 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7988628..7989177 | 1088..543 | 2260 | 96.6 | Minus |
2L | 23513712 | 2L | 7989243..7989553 | 542..232 | 1540 | 99.7 | Minus |
2L | 23513712 | 2L | 7991357..7991583 | 234..8 | 1135 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:58:15 has no hits.
FMO06313.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:29 Download gff for
FMO06313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pes-RC | 379..1486 | 4..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:17 Download gff for
FMO06313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pes-RB | 108..1215 | 4..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:12 Download gff for
FMO06313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pes-RD | 110..1217 | 4..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:12 Download gff for
FMO06313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7991358..7991585 | 4..233 | 99 | | Minus |
2L | 7988607..7989177 | 543..1107 | 96 | <- | Minus |
2L | 7989243..7989551 | 234..542 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:29 Download gff for
FMO06313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7988607..7989177 | 543..1107 | 96 | <- | Minus |
arm_2L | 7989243..7989551 | 234..542 | 99 | <- | Minus |
arm_2L | 7991358..7991585 | 4..233 | 99 | | Minus |