FMO06315.5prime Sequence
756 bp (756 high quality bases) assembled on 2008-09-15
> FMO06315.5prime
CAGTCGACATGCATGGAATAACACACCTGTACCGCCAGCATGCCGTGGAA
AAACAGCTGAGCGGTGGCGAGAGCTGGTCCCGCCAAATTTACCCGAGCTA
CGGCAGCAGTGCCGATGCCTCCTCGCAGGGCAGTCGCCTCTACAGCGTGG
ACTCCTCCAGCAGCTCCAGCTCCAATTCCAATAATTCCGGAGGTGGAGGC
AGTGGAACTGCAGGGGTTGAGAATTTGGGAGGAGTCACCGGCAGCGCCTA
CGCCCAGTGGCAGAGCGACCGACACTCTCTGCCACAGGCTGTGCCCGATG
CCCCTCGGTCGCTGGCTAACCACCACTACCGCAACTCGCCCACCCACCAA
GCCCACTACCAGCAGCCCACTAGCGGCAGTCTCAAGCGGACACCCTCCTC
GAAGCGCAGCTTCCTGGAACGATCTCACAGTCCGGCTATATATGGTAGCA
TGCGTCGCAGTGCAGGTCCGGACTTCGGCTCTCCCCCGCCCACCGCACCC
GTCGGTGGAGGCGGCTACTTCCCACACGATCTCGACGACATCTACGAGAG
CCAGACGGACCATCAGTATTTCACCCACACGGGTGCTAGCGGACCACAGC
AGCAGCGACCCACGGCTATCTCGATCTTTTCATCGAGTGAGTGCTGCCCA
CACCTCGCTGGACGACTATACCTTGCCCGGGGATGCATCGCGCCTGTCCA
TGAATAGTACAGACAGCGGGTGAGCAGCGGTCCCTTCAATCGCAGCGTTT
CAACAA
FMO06315.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RE | 3308 | CG17299-RE | 428..1176 | 9..756 | 3645 | 99.3 | Plus |
| SNF4Agamma-RC | 3197 | CG17299-RC | 317..1065 | 9..756 | 3645 | 99.3 | Plus |
| SNF4Agamma-RJ | 3675 | CG17299-RJ | 795..1543 | 9..756 | 3645 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21200971..21201408 | 9..446 | 2190 | 100 | Plus |
| 3R | 32079331 | 3R | 21201685..21201995 | 447..756 | 1380 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:13:58 has no hits.
FMO06315.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:12 Download gff for
FMO06315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RJ | 790..1541 | 1..754 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:19 Download gff for
FMO06315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RC | 310..1061 | 1..754 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:44 Download gff for
FMO06315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RJ | 790..1541 | 1..754 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:44 Download gff for
FMO06315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21200966..21201408 | 1..446 | 99 | -> | Plus |
| 3R | 21201685..21201993 | 447..754 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:12 Download gff for
FMO06315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17026688..17027130 | 1..446 | 99 | -> | Plus |
| arm_3R | 17027407..17027715 | 447..754 | 98 | | Plus |
