Clone FMO06316 Report

Search the DGRC for FMO06316

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:63
Well:16
Vector:pMK33-CFH-BD
Associated Gene/Transcriptspz3-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06316.5prime Sequence

951 bp (893 high quality bases) assembled on 2008-09-15

> FMO06316.5prime
CAGTCGACATGGCTCTGACCAATTTCTCGCTGCCCTTCGGTGCCCTGGGC
CAGCCCTGGGGAGTCACCATAGCTCCCCTGCATCCAATCCACCAGTTGGC
CAGCAACACAAATAATCTGCTCTACTCGCCAGCTGACCACCAGCAGCAGA
CTCCCGCGGAGGCAGCCGCCGATCCGGAGTACTTCAAGAACAATCCCTAT
GCGCCGCCGCAATCGGGTGGTTATCAATATCAAAATACAGCTGGACGACG
CAAGCAGAGTAACGCCTATTTGCCACCGACAGCGCCGAATGCTGTCCGGA
ATTCCGTTTACCACATCCAGCAGGTACAGCAGACGCAGCAGCAGCAAACG
CAACAACAACACCAGCAGCAGGATCAGCATGAGAACAGCGTGTCCTTCCA
GAGCAGCAGTTCCAGATCAAGTTCGAGCAGCACCACGGGCCAAAGTTCCA
TCCAGCTGACACAGACTCATGCGAGTGGCCGGGGACCGGCGGAGGGTTCG
TACTCCCGTTATAACGGACAGCAAGCACAGCCGCCGCAGCAGCAGCAACC
GCAACAGAAGCAATATTTCAATGCACACGGCAGTGCCAGTGCCACTTTTA
CTAAGAACAGCGGCAGCTTTAGTATTACCAGCTTTGGCAGCAGGCAGCAG
CAGCAGCAGCCACCGCAGCCGCAACAACCACCGCCATCGCAACAGCAGCA
ACCACCACCTGCACCACCGCCCCAAAGGTCCAGGCAGGCCAAGCCGGAGC
TCACCAGCTCAGACATACGGAGTTGCCCCGCCGGAAAATTATCCGGAACG
AGCACCAGGATTTACACGGGTTCAGGCTGGTCAGGGATTCAGGACTCAAG
TACACGCCGGTTCTAGACTACACGTGGAAGGAGGTGAGGAGGATGAAGAG
GAGGACGAAAAGAAGAGGGCAATTCTCAAAGCTAAAAAATGATAACCAAT
T

FMO06316.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
spz3-RA 2552 CG7104-RA 406..1307 8..907 4280 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7878246..7879147 907..8 4180 98.6 Minus
Blast to na_te.dros performed 2014-11-28 19:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6531..6937 325..733 300 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2666 327..680 276 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2333..2540 518..725 256 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2405..2850 310..750 243 56.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2608..3012 310..708 198 54.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6787..6946 518..686 177 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2376..2541 519..687 163 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6815..6997 519..704 156 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6923 350..555 148 57 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2592..2661 648..718 145 69 Plus
roo 9092 roo DM_ROO 9092bp 1102..1175 502..575 126 66.7 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 826..895 511..579 122 67.6 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3279..3369 522..609 121 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1537..1601 517..577 117 69.2 Plus

FMO06316.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:08 Download gff for FMO06316.5prime
Subject Subject Range Query Range Percent Splice Strand
spz3-RA 400..1316 1..918 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:20 Download gff for FMO06316.5prime
Subject Subject Range Query Range Percent Splice Strand
Spz3-RA 398..1314 1..918 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:31 Download gff for FMO06316.5prime
Subject Subject Range Query Range Percent Splice Strand
spz3-RA 400..1316 1..918 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:31 Download gff for FMO06316.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7878246..7879151 1..907 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:08 Download gff for FMO06316.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7878246..7879151 1..907 98   Minus