FMO06316.5prime Sequence
951 bp (893 high quality bases) assembled on 2008-09-15
> FMO06316.5prime
CAGTCGACATGGCTCTGACCAATTTCTCGCTGCCCTTCGGTGCCCTGGGC
CAGCCCTGGGGAGTCACCATAGCTCCCCTGCATCCAATCCACCAGTTGGC
CAGCAACACAAATAATCTGCTCTACTCGCCAGCTGACCACCAGCAGCAGA
CTCCCGCGGAGGCAGCCGCCGATCCGGAGTACTTCAAGAACAATCCCTAT
GCGCCGCCGCAATCGGGTGGTTATCAATATCAAAATACAGCTGGACGACG
CAAGCAGAGTAACGCCTATTTGCCACCGACAGCGCCGAATGCTGTCCGGA
ATTCCGTTTACCACATCCAGCAGGTACAGCAGACGCAGCAGCAGCAAACG
CAACAACAACACCAGCAGCAGGATCAGCATGAGAACAGCGTGTCCTTCCA
GAGCAGCAGTTCCAGATCAAGTTCGAGCAGCACCACGGGCCAAAGTTCCA
TCCAGCTGACACAGACTCATGCGAGTGGCCGGGGACCGGCGGAGGGTTCG
TACTCCCGTTATAACGGACAGCAAGCACAGCCGCCGCAGCAGCAGCAACC
GCAACAGAAGCAATATTTCAATGCACACGGCAGTGCCAGTGCCACTTTTA
CTAAGAACAGCGGCAGCTTTAGTATTACCAGCTTTGGCAGCAGGCAGCAG
CAGCAGCAGCCACCGCAGCCGCAACAACCACCGCCATCGCAACAGCAGCA
ACCACCACCTGCACCACCGCCCCAAAGGTCCAGGCAGGCCAAGCCGGAGC
TCACCAGCTCAGACATACGGAGTTGCCCCGCCGGAAAATTATCCGGAACG
AGCACCAGGATTTACACGGGTTCAGGCTGGTCAGGGATTCAGGACTCAAG
TACACGCCGGTTCTAGACTACACGTGGAAGGAGGTGAGGAGGATGAAGAG
GAGGACGAAAAGAAGAGGGCAATTCTCAAAGCTAAAAAATGATAACCAAT
T
FMO06316.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz3-RA | 2552 | CG7104-RA | 406..1307 | 8..907 | 4280 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7878246..7879147 | 907..8 | 4180 | 98.6 | Minus |
Blast to na_te.dros performed 2014-11-28 19:43:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6531..6937 | 325..733 | 300 | 58 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2666 | 327..680 | 276 | 59.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2333..2540 | 518..725 | 256 | 62.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2405..2850 | 310..750 | 243 | 56.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2608..3012 | 310..708 | 198 | 54.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6787..6946 | 518..686 | 177 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2541 | 519..687 | 163 | 58.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6997 | 519..704 | 156 | 58.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6923 | 350..555 | 148 | 57 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2661 | 648..718 | 145 | 69 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1102..1175 | 502..575 | 126 | 66.7 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 826..895 | 511..579 | 122 | 67.6 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3279..3369 | 522..609 | 121 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1537..1601 | 517..577 | 117 | 69.2 | Plus |
FMO06316.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:08 Download gff for
FMO06316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz3-RA | 400..1316 | 1..918 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:20 Download gff for
FMO06316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spz3-RA | 398..1314 | 1..918 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:31 Download gff for
FMO06316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz3-RA | 400..1316 | 1..918 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:31 Download gff for
FMO06316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7878246..7879151 | 1..907 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:08 Download gff for
FMO06316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7878246..7879151 | 1..907 | 98 | | Minus |