FMO06318.5prime Sequence
972 bp (960 high quality bases) assembled on 2008-09-15
> FMO06318.5prime
CAGTCGACATGGCATTGAGCAGCAGAGTTCTTTGTCTGCGATTGCAGCAC
CATTTATTACTGGTTATTTTAACGATTTTCCTGCTTTGCCCCGCCGCCTC
GGCCCAGAACGAAGAAGAAGATGGTCCGTACCGGGGAAAATATCTGGGGA
AACTGAACTCCTACCATCATCAAGTGTCCGGCGATGTGTACGCTGTGAAT
GAGTACACCTTTCTGATTGTGGGCTTTAACTACGATGGCAACGGGGCGGA
TACGTTTTTCTGGTCGGGCGCTAGTAATCGGCCGGGACCGCAGGGATTCA
TTGTGCCCGATGAGTATGGCAAAACCAACATTCTGGATCGCTATCACAAC
AAGGATTTCACGCTGACGCTGCCGGATCGAAAGAAGATAACTGAGATTAA
ATGGCTGGCGGTTTACGATCTGAGCAGTCAAAACAACTTTGGCGACGTTT
ATATACCCGAGGAGTTCGATCCACCGATGAGCCAATTGGGCGGAACCTTC
TCCAAGCGCAGTCACAATGTGAGCAGCAGCAGTGTTGAGATCTTGGACTC
AAAGACCATTCGCATCAAGGACTTTACCTACGATGGGCGTGGCAAGAGGA
CATTTTTCTGGACAGGAGTCGGGCCACAGCCATCGAGTCGAGGAAGCAAG
CTGCCAGATGAGCGAGGATACCTTGATCCTATAAGACAGTACAACAAGGA
GACCATAGAACTGGAACTGCCAGGAGATAAGACTATCTTTGACATCGATT
GGAATCAGTGTATACGATGTGGCTGACAACGAGAACTATGGTCATGTTCT
GTTCAACGATAAACTTAATGTTCCACCTTCCCTAGTGAAAGTTACCCATT
CGAATTCTCGCTGCCCAATTGCCGGCAACTACACAATGAAATGCAAGTTG
TCTGGGAGTTTTCGGGCCCCAGATCCACGTTTCAACTTATCCGGTCAGGT
TGGGCGGCAACGAATAATAGGT
FMO06318.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| knk-RA | 2674 | CG6217-RA | 446..1398 | 9..963 | 4530 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10124120..10124467 | 670..323 | 1740 | 100 | Minus |
| 3R | 32079331 | 3R | 10124542..10124764 | 322..100 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 10123757..10124047 | 963..671 | 1070 | 95.6 | Minus |
| 3R | 32079331 | 3R | 10125129..10125219 | 99..9 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:58:47 has no hits.
FMO06318.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:23 Download gff for
FMO06318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knk-RA | 446..1406 | 9..972 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:23 Download gff for
FMO06318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knk-RA | 443..1403 | 9..972 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:05 Download gff for
FMO06318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knk-RA | 446..1406 | 9..972 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:05 Download gff for
FMO06318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10123749..10124047 | 671..972 | 95 | <- | Minus |
| 3R | 10124120..10124467 | 323..670 | 100 | <- | Minus |
| 3R | 10124542..10124764 | 100..322 | 100 | <- | Minus |
| 3R | 10125129..10125219 | 9..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:23 Download gff for
FMO06318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5949471..5949769 | 671..972 | 95 | <- | Minus |
| arm_3R | 5949842..5950189 | 323..670 | 100 | <- | Minus |
| arm_3R | 5950264..5950486 | 100..322 | 100 | <- | Minus |
| arm_3R | 5950851..5950941 | 9..99 | 100 | | Minus |
