FMO06322.5prime Sequence
973 bp (927 high quality bases) assembled on 2008-09-15
> FMO06322.5prime
CAGTCGACATGAAACCCATGCTGATCCTTTTGGCTCTGGCAGGCTTTGCC
ATCTGTATTCGGGCAGACGTGTCCCACCTGTACGGAGGAGGTTACCACGA
TCACGGCCATGATCACCATCACCACCATGATCACGATCACGATCATGATC
ACCACCACTATGATGTCCATTCCCACCACCATTCTCCCTCGTCACACGAT
CATCATGATCTGCACATTGATCTGCACTATCAGCCGGATCACCACCATCA
TCATCATCAAGAGGCCAAGTTCGATATCCCTAGCGGATATAGCTATGGAC
CTCCAGAGAAACCTCGCCAGAAGTACCTGCCGCCCAAGGTTTCCCTGCCA
CCGCCACCACCTCCACCGCCCAAGGCAACTTATCTGCCTCCCTCAAAGCC
TGAAGTGAAGTACCTGCCCCCCGAGCCGGTGGCCAAGTATCTGCCACCCA
AGGTCGCTCCCAGCCTGCCTCCTCCACCACCACCTCCAGTTGTGGCGCCC
AAGCCCACATATCTGCCTCCCAGTCCGCCAGAGTCCAAGTACCTTCCTCC
TCCGACGCCCGAGGTGAAGTATCTGCCACCTGCTCCAGTGGCAAGGTATC
TGCCACCCAAGGTTGCACCCAGTCTGCCACCACCACCTCCACCCCCACCA
GTGGCTCCCAAGAAGCTGTATCTTCCTCCTGCCGAGCCGGAGACTAAGTA
CCTGCCACCTTCCGAGCCCGTCGAGAAGTATCTGCCTCCTAAGCCCGAAC
AAAAATATCTGCCACCCCAGCCTGAGGTAGATTTCCACATACCGATTCAT
CCTATGCACTGCCCTTGGGCCCTGCACAAGTCCAATCCACGACGCCGAGC
TTGATACCAACTACAAGCTCCACTCGGCGTTTCAGCATGCAAGCTTTCTG
ACCATTCGTTTGGCGCGCGGCCAGGTAAGTGTCATAATCATATCATAATC
ATATCATAATCACAACTAGGCTA
FMO06322.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15022-RA | 1063 | CG15022-RA | 71..951 | 9..885 | 4200 | 98.9 | Plus |
| CG15022-RA | 1063 | CG15022-RA | 460..643 | 557..740 | 230 | 76.3 | Plus |
| CG15022-RA | 1063 | CG15022-RA | 619..802 | 398..581 | 230 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4459324..4460183 | 868..11 | 4110 | 99.1 | Minus |
| 3L | 28110227 | 3L | 4459532..4459637 | 503..398 | 215 | 80.2 | Minus |
| 3L | 28110227 | 3L | 4459691..4459796 | 662..557 | 215 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:44:31 has no hits.
FMO06322.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:36 Download gff for
FMO06322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15022-RA | 65..939 | 1..874 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:14 Download gff for
FMO06322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15022-RA | 61..935 | 1..874 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:55 Download gff for
FMO06322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15022-RA | 65..939 | 1..874 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:55 Download gff for
FMO06322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4459342..4460191 | 1..850 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:36 Download gff for
FMO06322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4459342..4460191 | 1..850 | 99 | | Minus |
