FMO06323.5prime Sequence
1132 bp (996 high quality bases) assembled on 2008-09-15
> FMO06323.5prime
CAGTCGACATGAGGCTTCCGAAAGGATATAGGACACTATCACCAGCATCG
AACGCTGCCCAGACGCTACCACTCTCCTACAATTCACAAACCAGTCTGAG
CCTTCTTCGGCTGCTCACAATTGCTCTGGTGATTGGATCGCAAGTTCAAG
TTCTATACACGACATCCGTCGAAACAAAATCCCCCTCCGCAAGTGAACAA
TCCAGAAACGGCGAGAATCGTTCATTACTTTTTGATGACTATAATAAAAC
TAAATCGACATTATCAACTGCTGATTACCTGTCAGCCACAAGGGCAACCC
TTTACGCGTTTTCATCGCAGGATCAGGACGAGGACCATTCCCAAATGCCA
ATCGAGGCGTCTAACGCTCCGCACAGCCCCATTCCCACGAAAATGAGTCG
GGGTAAAATACCCATGGAGACACCGGGCAGCATGGAGTTTAGCAGCAATA
GCCTTCCAATCAAAAATGTAGGGACAACTGATCAGCTGACGACTGTGACC
ATGCCCACCACAGCATTCGCATCCCTAAAAGTCGACAGAAGTACCATGAA
ACAGCCAATTGATTCCACACGCACGAGGAATCATTGGACAGCAAGTGGAT
TCGCACGTGTCACAGAACGACCACGTAGCAAGCACCACCACGAGCACCAC
TGGGGACCCTTTTTTGAGGAGCCCATCAACTCGGCAACCTCGGGTGACAA
CCTCGTTTCCGCCGTACATTTGTTTACGGAAGCGGTGCTCAATTGCCGTG
TCGGTATGCTCAAGGATAAAACTGTCATGTGGGTCAGGCGAACGGCAGAG
AAGGTATCGCTCCTGACCGTTGGCACGTGACCTACAGTGGAGACCCGAGA
ATTCGGGTGAAGTTCCAGTACCGGAACAATTGGCGATTCTTATCAATCCC
ACGCAGACTGAAGATGCCGGAAGTTTACATGTGCCAGGTTTCACCCATCC
CCCCCGGGTATTCACCACAATCTCACTGTCCTTGGAACCCCCCTGAGATA
ATCAATGGACCACGAAAGACGTGGGGGGATCGTATTAATAAGTCTGAGCA
CCGTCGATCTACATGCCAAATATCCGCGTACCTTTCGAAGAACGTCGAAC
ATCTAAATCCACCGATTCCGCCACGATGTCGT
FMO06323.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr18-RA | 2630 | CG14948-RA | 461..1543 | 9..1085 | 4940 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16066367..16066808 | 157..598 | 2210 | 100 | Plus |
| X | 23542271 | X | 16067623..16067801 | 597..775 | 895 | 100 | Plus |
| X | 23542271 | X | 16068715..16068924 | 774..980 | 790 | 97.2 | Plus |
| X | 23542271 | X | 16065552..16065699 | 9..156 | 740 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:58:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 2824..2880 | 425..480 | 111 | 68.4 | Plus |
FMO06323.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:19 Download gff for
FMO06323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr18-RA | 455..1540 | 2..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:16 Download gff for
FMO06323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr18-RA | 455..1540 | 2..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:59 Download gff for
FMO06323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr18-RA | 458..1543 | 2..1085 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:59 Download gff for
FMO06323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16065549..16065699 | 2..156 | 97 | -> | Plus |
| X | 16066367..16066807 | 157..597 | 100 | -> | Plus |
| X | 16067624..16067799 | 598..773 | 100 | -> | Plus |
| X | 16068715..16068928 | 774..985 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:19 Download gff for
FMO06323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15959582..15959732 | 2..156 | 97 | -> | Plus |
| arm_X | 15960400..15960840 | 157..597 | 100 | -> | Plus |
| arm_X | 15961657..15961832 | 598..773 | 100 | -> | Plus |
| arm_X | 15962748..15962961 | 774..985 | 96 | -> | Plus |
