FMO06326.5prime Sequence
1127 bp (1007 high quality bases) assembled on 2008-09-15
> FMO06326.5prime
CAGTCGACATGGGCGCGGACATGGGCATCAATGGACCGCTCAGCTATCAC
TCGTCCGCCTACAAGCGACCCGGCAACAATATCTACATCACCAGGAGAAT
TGGCGAGGCGGTGGAACTAGAGCCGCATCTGCGAAAGCCCGTGGAGAGCC
AGAGTCCCATTGTGAATCCTCAGTTCCGACCCATGACCAATCAAATGTTG
CACCAGCAACACCAACAGATGCAGCAACAACAGCAACAGCAACAGTTGCA
GCAACGCCAGCAACCGGGTTTCCTGCAGCAGCTCTTTGGCATAGGTGGCA
GTGGTGGTGGTGGTGGTAGCGGTACCCAGCAACAGCAACATGTGCGACCA
GTGCCGCTGCAACAGCAGCAAGTGCAACAGATAGCGCAGCAACACCCGCA
ACAGCAACATCTTGTGGGCGGTCAGCCGACCACATTCCGAGCTGTCTCCG
AAAATGATCTTTATCTCTTGGGAGCCATTGAAAAGTTGGTGTATCGAGTG
GATTACCTGGAGAGTCGCGTGCGGCGCTCGGAGCAGCTGATCTACTATCT
GATGGCCGGAAACAATCAGAAGGAGGTGAAGGATCCCTGTCCCGCGAACT
TCACGCGCATCAGCGACAACTGCTACTACATCAACAGCCAGCAGCAGGTG
AACTGGAAGACGGCAAACTCTGCCTGCAAGGGTCTAAACTCCCACCTGGC
CGAGTTCGAGAAGGTCTCGGAGAATGAGGAGATCATGGCCTATCTGCTGA
ATCAGCCGACGCATCGTGGTCGCGATTACTGGGCTGGGCGGTCTCAATCC
TGGCCTCCTCTGGATCTGGTCAATTCGGCTAAGCCGGTGAATCCCAACAT
GAATCTCACATCCATTGCGATGGCCCAGAAAGGGGGAGACTCGACGGCCG
CCAATCTGGTGGACAGTTCGGAGCAGGCGGCAGAGGAGGCGACCGGCGAG
GATGTGCTGAACAACCGTGCAATAGAGGGCAAGGTCGCTGCCTACGGCTA
AGTTACATGCGAAAGCCAGCTATGTGTACTACGGAAGAATGCACCTCGCG
GCCCTACTACCTCTGCGAGCGAGGACAAAAGCTGGAAACAGATCAAAAAT
CCGCAGCTTGAACTTTCAGGCAAGCTT
FMO06326.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14866-RB | 1687 | CG14866-RB | 404..1506 | 9..1096 | 5010 | 97.9 | Plus |
| CG14866-RA | 1759 | CG14866-RA | 476..1578 | 9..1096 | 5010 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15316946..15317438 | 9..501 | 2465 | 100 | Plus |
| 3R | 32079331 | 3R | 15317494..15318073 | 501..1070 | 2275 | 96.4 | Plus |
Blast to na_te.dros performed 2014-11-28 21:04:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6923 | 200..369 | 248 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6938 | 221..426 | 235 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2483..2686 | 200..412 | 199 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2622..2691 | 201..270 | 179 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6864 | 327..406 | 174 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6824 | 327..411 | 173 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2409 | 318..411 | 168 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2391 | 327..411 | 166 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6845 | 327..411 | 164 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1164 | 327..412 | 160 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6881 | 327..411 | 156 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2463 | 327..411 | 153 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2376 | 340..411 | 151 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6797 | 344..411 | 150 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2861 | 327..404 | 140 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6776 | 354..411 | 130 | 72.4 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3259..3336 | 325..408 | 127 | 65.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1072..1130 | 353..411 | 124 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2358 | 359..411 | 121 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6503..6617 | 572..688 | 121 | 57.3 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3300..3381 | 327..409 | 116 | 63.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1097..1173 | 327..409 | 113 | 63.9 | Plus |
FMO06326.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:42 Download gff for
FMO06326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14866-RA | 476..1571 | 9..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:33 Download gff for
FMO06326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14866-RB | 232..1327 | 9..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:59 Download gff for
FMO06326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14866-RA | 476..1571 | 9..1090 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:59 Download gff for
FMO06326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15316946..15317438 | 9..501 | 100 | -> | Plus |
| 3R | 15317495..15318073 | 502..1070 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:42 Download gff for
FMO06326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11142668..11143160 | 9..501 | 100 | -> | Plus |
| arm_3R | 11143217..11143795 | 502..1070 | 97 | == | Plus |
