FMO06327.5prime Sequence
926 bp (828 high quality bases) assembled on 2008-09-15
> FMO06327.5prime
CAGTCGACATGCATGGACATCACAACCCCAACCATCTGCCGCAGCAGCAG
CCACAAAATCCGCAGGAGCAGCAGTCGGGTGCCATCATGAAGGCAGCCAA
CCAGCCCCACCATCCCGCCCACAGCCATCCGCTCAATCACCCACATCCGC
ACCAGCATGCCCAGCCACATCCGCATCCACATCCCCATCCGCATCACAAG
CTGTCGGCGAGAAGGGCGCGCAGTCGCAGTCGAAGTCGCAGTCCGACGCC
GGATGGCAATCAGGACTACGATGTGACCAGGATGCGGGAGGAGGACTTCG
AGCGGCTGGCCGTCTACCTGGTGCCGGATGTCCAGGCGGAGCGGGGACTG
CCCAATCGGGCGGACAAGACGCTGCCGCGCAGCCTGACGCTCAAGTCATC
CATGGTCTACTCAACGCCAAATGTTAAGACTGAAGGAGTTTGGAGCAGCG
GGGTCATCCCACGTGGCACTCGCTTTGGCCCATTCGAAGGCATTCCAACC
TCTAATTATCCCAATGATAAGAATAAGGCGCGCTATTTCTGGCGGATCTT
CAAGGACGATGACTACTATTACTTGGATGGTTCCGATCGCTCGCAGTCCA
ATTGGATGCGCTATGTGGCCTCCGCTTATATTTTATCCGTAATGAACCTG
GTGGCGTGCCAGCACCATGAGAACATCTATTTTCTACACCACCCCGCGAC
ATTCTGCCCAACGAGGAGCTTAATGGTTTTGGTACTGAAGGGACTTCGCC
AGTCGCCTGGGCTACGATGTGGATCCTGAGACGACGATCTTTCGCGCATG
CAATCAGGCTGTGGAAATCGGAGGAGAAGTGGACGAGGAAGGAGGAAGAA
GGCGAAGGGAGAGGACGGAAAGCCGCGATATTCGATGCCAGCTCCGGAAA
TTCCACCCGATGTGGCCGTGAGTACC
FMO06327.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Blimp-1-RF | 7517 | CG5249-RF | 619..1534 | 2..923 | 4205 | 97.6 | Plus |
| Blimp-1-RE | 3929 | CG5249-RE | 189..1104 | 2..923 | 4205 | 97.6 | Plus |
| Blimp-1-RD | 4192 | CG5249-RD | 452..1367 | 2..923 | 4205 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5644206..5644632 | 2..428 | 2105 | 99.5 | Plus |
| 3L | 28110227 | 3L | 5645674..5646046 | 545..923 | 1325 | 93.7 | Plus |
| 3L | 28110227 | 3L | 5644733..5644851 | 427..545 | 595 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:11:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2324..2510 | 17..203 | 223 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2474..2536 | 17..76 | 109 | 68.3 | Plus |
FMO06327.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:13 Download gff for
FMO06327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Blimp-1-RA | 618..1535 | 1..926 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:35 Download gff for
FMO06327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Blimp-1-RA | 618..1535 | 1..926 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:59 Download gff for
FMO06327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Blimp-1-RD | 451..1368 | 1..926 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:59 Download gff for
FMO06327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5644205..5644632 | 1..428 | 99 | -> | Plus |
| 3L | 5644735..5644851 | 429..545 | 100 | -> | Plus |
| 3L | 5645675..5646047 | 546..926 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:13 Download gff for
FMO06327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5637305..5637732 | 1..428 | 99 | -> | Plus |
| arm_3L | 5637835..5637951 | 429..545 | 100 | -> | Plus |
| arm_3L | 5638775..5639147 | 546..926 | 94 | | Plus |
