FMO06330.5prime Sequence
641 bp (612 high quality bases) assembled on 2008-09-15
> FMO06330.5prime
CGTTATCAGTCGACATGCCGGAGCAGGATAATTACGATGATGAGTTGGTC
TCCAGCAATCCCAACCAACGGAACTGGCGCGGAATTCTCATCGCGCTGCT
GGTCATCATCATTGTGCTGGCCCTGATTGTTACATCGGTGGTGCTGCTCA
CGCCCCCCGATGAGGGACCGCGGGTCAAAGGGCAGCGCATCAAGCTGCAG
GACATCGTCGATGGCCTCTTCGTGCCGCAGCACTCCAACGGCAGCTGGAT
CGATGGCGAGGAGTTCCTGTACCAGGACCATTTGGGTCGCATCTGTCTGC
TGAATGCAGCCAATCGCTCGGAACGTGTCCTCATGTCCAATGTGACATTT
AAAACCCTGTCACCCTTCACCTTCACCATATCGGCGGACAAGCGCTATCT
GCTTCTGGCCCAAAATGTTGTGAAACTATTCCGGCACTCGTACTTGGCCC
AGTACACGCTCTACGACATTCAGACCAGCGAGAGCATCAAGCTGCGCCAC
AGTCCGCACCAGGATGAATGGCCATACCTGCACTACGCACGATTTACGCC
AGCTGGAAACGCACTGGTCTGGGTCCAGAGCTACGATATCTATTACCGAA
AGGAGGTCCCGCAGTGCGTCCATGCATCGGAATACCCACGA
FMO06330.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11319-RC | 7965 | CG11319-RC | 1071..1697 | 14..641 | 3055 | 99.2 | Plus |
| CG11319-RB | 4518 | CG11319-RB | 1071..1697 | 14..641 | 3055 | 99.2 | Plus |
| CG11319-RA | 4635 | CG11319-RA | 1071..1697 | 14..641 | 3055 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6577428..6577592 | 641..476 | 735 | 97.6 | Minus |
| 2L | 23513712 | 2L | 6577653..6577780 | 478..351 | 625 | 99.2 | Minus |
| 2L | 23513712 | 2L | 6579262..6579382 | 260..140 | 590 | 99.2 | Minus |
| 2L | 23513712 | 2L | 6580413..6580512 | 142..43 | 500 | 100 | Minus |
| 2L | 23513712 | 2L | 6578905..6579000 | 350..255 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:19:56 has no hits.
FMO06330.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:37 Download gff for
FMO06330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11319-RA | 1063..1696 | 4..640 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:38 Download gff for
FMO06330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11319-RA | 1061..1694 | 4..640 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:23 Download gff for
FMO06330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11319-RA | 1063..1696 | 4..640 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:23 Download gff for
FMO06330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6578905..6578999 | 256..350 | 100 | <- | Minus |
| 2L | 6579267..6579381 | 141..255 | 100 | <- | Minus |
| 2L | 6580415..6580510 | 45..140 | 100 | <- | Minus |
| 2L | 6586501..6586539 | 4..44 | 92 | | Minus |
| 2L | 6577429..6577589 | 479..640 | 97 | <- | Minus |
| 2L | 6577653..6577780 | 351..478 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:37 Download gff for
FMO06330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6580415..6580510 | 45..140 | 100 | <- | Minus |
| arm_2L | 6586501..6586539 | 4..44 | 92 | | Minus |
| arm_2L | 6577429..6577589 | 479..640 | 97 | <- | Minus |
| arm_2L | 6577653..6577780 | 351..478 | 99 | <- | Minus |
| arm_2L | 6578905..6578999 | 256..350 | 100 | <- | Minus |
| arm_2L | 6579267..6579381 | 141..255 | 100 | <- | Minus |
