FMO06331.5prime Sequence
1167 bp (953 high quality bases) assembled on 2008-09-15
> FMO06331.5prime
CAGTCGACATGATCCACTGGAGACTTCTTTCCGCCCTACTTGTGGGCCTG
GCTATAGCTTTAACGCTTCCAGTCGACGGGGAGCTCTTGGCCAGATCGCC
GGCCAGCGTCTCGAGTAACCGCTTTGGCCTACGCCTAACTACTAAGTTGG
GACTAACTCAACCAGATGCAAATGTGGTGGTTTCCCCCTTGCTTATACAG
GCGGCGCTCACCCTGCTGTATGCGGAAAGTTCTTCGGAGTACGGTAGCCA
ACTCCGCCAGGCTCTGGAGCTGACCCACGCCAGTCACCCGAAGCTTGCGG
TGCAGGACTTCGAGACCCTTTTGACGGACCTCAAGCAGTCGGCTGCCATT
GGCTGTCGCTTGCGGTTGCTGAGTGACCTCTACGCACAGCAGCGCTTCAC
CTTCAACTTCCGCAATGAATTCGAGACCTTGGCCGCCCGAATGGGCGTCG
GCTGCCACCGCTTGTCGTGGGAAAGTGCGTCGAACGCGGCCCAGGATATC
AACTACGCCTTCCTTAGCCGCAACAACTTCAGCCTGGGGGAGCTCGTCAG
TGCCCCCCAACTCGAGTCCTTGGCCGAGCACAACACGCCCTTTTTACACG
TCTCGGGAGTCACCTTCCGAGCCCCTTGGGCTTGGGCCTTCGATCCTACC
GAGACGCAGAGCATCAACTTCTTTGCCGGGGGAAATCGCCCCAGGCTGGT
GGATGCCATGTTCGGACAGCACCGCTACAGGTACGCTGAAGTGCCCGCTC
TGGACGCCCAGCTCATTGAGGTGCCCTTCGCCACTGCAGACCTCCGAATG
CTCATTGTATTTCCCAATCGGCCTGATGGCCTGGTCCAACTTGAGAGGAA
AGCTGGCGCAGTCCGATCTCCACCAGCTAATGTCCCCGCTCGAGGAGCGC
AAGGTGGGCCTCACTCTGCCAAAGCTCAGAGTGCTAGTCCACTCCGACCT
GAAGCACGTGCTCGAGGAGTGGGTCTGGCAAAACTATTCACATCGGAAGT
CACCTGAGCGAGGTCTTCAGCTCATCCTGTCCGTTCGGCCTCACCCTTTG
GGAGCAGTGGACAGAGGGTCACATGGAGCTACAGGAAGATGGGCGCCATG
TCAACAACTCTCTCTCTCTTCGGGATCTGATCCGAACGATCCTGCCTTGT
TATTAATCTACGTTCTT
FMO06331.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn43Ad-RA | 1432 | CG1859-RA | 65..1197 | 7..1135 | 5085 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7154399..7155360 | 969..7 | 4660 | 99.2 | Minus |
| 2R | 25286936 | 2R | 7154073..7154199 | 1092..970 | 240 | 86.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:59:15 has no hits.
FMO06331.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:06 Download gff for
FMO06331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 61..1159 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:39 Download gff for
FMO06331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 59..1157 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:04 Download gff for
FMO06331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Ad-RA | 61..1159 | 1..1098 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:04 Download gff for
FMO06331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7154399..7155364 | 1..969 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:06 Download gff for
FMO06331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3041904..3042869 | 1..969 | 98 | | Minus |
