FMO06332.5prime Sequence
455 bp (-60 high quality bases) assembled on 2008-09-15
> FMO06332.5prime
ATAGCATCCTTTATACGAACTTATCAGTCGACATGGCGTTTGGAACAATG
ACGTCTTTGCTTGGCATGATCCCGCTGCTGGCGATCGGCATGAATTTCTA
TCGCTATCAAAGCGTAGATCCCGAGAACAAGGTCCAGGAGCCAACCGTCA
TACGTCGTCAGTATGATTTCGTGGTGATTGGCGGCGGATCCGCTGGAGCT
GTGGTGGCGAATCGCCTGAGTGAGGTGCGCAACTGGACCGTTCTGCTACT
CGAAGCCGGCGGTGATGAAACGGAGATCTCGGACGTGCCAGCTCTGGCGG
GCTATCTGCAGCTTACGGAGTTGGACTGGAAGTACCAGACTACGCCTTCA
TCCACCCGCCAGTATTGTCAGGCGATGAAGGGCGATCGCTGCTTTTGGCC
AAGAGGAAAAGTCTTGGGCGGAAGTTCTGTTTTAAATGCTATGGTCTATG
CTCGT
FMO06332.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45065-RA | 3359 | CG45065-RA | 1295..1719 | 31..455 | 2110 | 99.8 | Plus |
| CG45064-RA | 3359 | CG45064-RA | 1295..1719 | 31..455 | 2110 | 99.8 | Plus |
| CG9518-RC | 3952 | CG9518-RC | 1112..1262 | 160..310 | 215 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14877010..14877315 | 455..150 | 1515 | 99.7 | Minus |
| X | 23542271 | X | 14877545..14877663 | 149..31 | 595 | 100 | Minus |
| X | 23542271 | X | 14865679..14865829 | 310..160 | 215 | 76.2 | Minus |
| X | 23542271 | X | 14921251..14921417 | 340..174 | 190 | 74.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:44:05 has no hits.
FMO06332.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:23 Download gff for
FMO06332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9517-RB | 1294..1718 | 31..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:41 Download gff for
FMO06332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9517-RB | 1298..1722 | 31..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:22 Download gff for
FMO06332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45064-RA | 1295..1719 | 31..455 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:22 Download gff for
FMO06332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14877010..14877315 | 150..455 | 99 | <- | Minus |
| X | 14877545..14877661 | 33..149 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:23 Download gff for
FMO06332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14771578..14771694 | 33..149 | 100 | -> | Minus |
| arm_X | 14771043..14771348 | 150..455 | 99 | <- | Minus |
