FMO06333.5prime Sequence
1134 bp (1046 high quality bases) assembled on 2008-09-15
> FMO06333.5prime
CAGTCGACATGAAATCAAAGTACGAAAACATGAAGATCATCTACAATCGC
AGCAAGATCGGCTGGTACTGGGCTCCGTTGTTCGTATCATGCTGGTTTCT
GCTCTTCTATCTGGTGGTAATACCCAGCTTCCATCGCATGCCGCAGCTAA
AGACGCTCGAGGATGAGCGCCAGCAGCCGGGTCAGTTCATCGGGGAGCGG
GCGGAGAACACCCTTCTGAGGCTTTCCAAGATTGGACCCAAGGTCGTGGG
CAGTGCGGCCAACGAACAGGTGGCTGTTCAGTTTCTTCTCAGCGAGATAG
GTGACATCATCGACGATGCTCGAACGGATCTCTACGATATCGAGAAGGAT
GTTCAGGTTGCCTCCGGTAACTATCTTCTCTGGTCCATGGTCAATGTCTA
TCAGAGCATTCAGAATGTGGTGGTCAAGCTATCGCCGAAGAATGCAACCA
GTGAAGCTGCTCTTTTGATCAATTCCCACTTCGATTCGGTGCCGGGAAGC
TCGGGTGCCGGAGACGCCGGAATGATGTGCGTGATTATGTTGGAAGTTCT
CCGGGTTATCACGAAATACGAGACCCCACTAACCTACTCGGTTGTATTCC
TCTTCAACGGAGCCGAGGAGAATCCACTGCAGGGCAGCCATGCATTCATC
ACCCAACATCCTTGGGCCCAAAACATTAGAGCGGTCATTAATTTGGACTC
GGCTGGCAGTGGAGGACGAGAAATTCTATTTCAATCCGGACCCGATCATC
CTTGGCTCATGAAGTACTATGGCAAAAACATAGTTCATCCGTTTGCCTCC
ACTATCGGTGAGGAATTGTTCCAAAATGGCTTTGTTCCCTCAGAGACCGA
TTATCGCGTGTTCCGTGACTACGCCATATACCCGGTCTCGATATGGCACA
GACTTTGAATGGCTATGTATACCATACCAAATATGATCGCTTTATCTCAT
CCCGCGCGAACTTACCAATGACTGTGAAATATTTTGGCTCTGGTCAGCCC
TGGCCACGCAGAGACTGAGAATCATCGAATACGCCGAGGACACATGATTT
CTTCGACATGATGGCTGTTCTTTGTCTATATCGGAACACGCATAATCTTC
AACATAACTGTGTCCTGGCGGCTCACATCGAATT
FMO06333.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9416-RB | 2936 | CG9416-RB | 120..1208 | 9..1079 | 5005 | 98.3 | Plus |
| CG9416-RA | 3076 | CG9416-RA | 260..1348 | 9..1079 | 5005 | 98.3 | Plus |
| CG10062-RD | 2777 | CG10062-RD | 650..833 | 592..775 | 245 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19369944..19370614 | 679..9 | 3355 | 100 | Minus |
| 2R | 25286936 | 2R | 19369614..19369739 | 886..762 | 580 | 99.2 | Minus |
| 2R | 25286936 | 2R | 19369798..19369886 | 764..676 | 445 | 100 | Minus |
| 2R | 25286936 | 2R | 19369442..19369559 | 996..884 | 345 | 94.1 | Minus |
| 2R | 25286936 | 2R | 19359499..19359581 | 334..416 | 235 | 85.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:59:26 has no hits.
FMO06333.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:14 Download gff for
FMO06333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9416-RA | 251..1363 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:42 Download gff for
FMO06333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9416-RA | 250..1362 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:10 Download gff for
FMO06333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9416-RA | 251..1363 | 1..1090 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:10 Download gff for
FMO06333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19369404..19369558 | 885..1027 | 92 | <- | Minus |
| 2R | 19369616..19369736 | 765..884 | 99 | <- | Minus |
| 2R | 19369798..19369882 | 680..764 | 100 | <- | Minus |
| 2R | 19369944..19370618 | 1..679 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:14 Download gff for
FMO06333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15256909..15257063 | 885..1027 | 92 | <- | Minus |
| arm_2R | 15257121..15257241 | 765..884 | 99 | <- | Minus |
| arm_2R | 15257303..15257387 | 680..764 | 100 | <- | Minus |
| arm_2R | 15257449..15258123 | 1..679 | 99 | | Minus |
