FMO06335.5prime Sequence
1048 bp (953 high quality bases) assembled on 2008-09-15
> FMO06335.5prime
CAGTCGACATGAGCACGGAAAAAGAGATAATTTTGCAATTTGCTCCGTGG
GAATCTTTTGTGTCGCCCACTTTCTGGCACAAGCTAGCGGAGCTTAAGCT
CGACCACGATCGCCTGTCCGACTCGAAACGCTCCATTACTGGACACTACA
CAAATCGTAATGCAAGTGGATGCCTTTTGGAAGTAGACTACACGGCCTAC
AACAGAATGGCAAAGCCTCCAAAATTCAGCCATTCCGCTATAGGCACCAT
CTACAATAAGAACACAATCGAAGAGTTCAAGGCCCTGGACAAATTACAAC
TGCTGGCCGATGAGGGCAAGGAACTGCTGGCTGATATGTGCAGTGGTGGC
GCCTTGAGAGATCCCAGTCTATTGACCCGGTTCTTTGTTCTCTCCTTTGC
CGATTTAAAGTGTCACAGCTACTACTATTGGTTCGCCTTTCCGTGCCCGC
TGACGCCCACCTTAAAGCTTCAGGGAGCCGTCCAAAAACTGCGGGACTTG
CCCAATAGTAGTAGCTATATAATGGCTCTAAAGGCCTTACCCACTGAGTC
ACAGAACTTCTTCATTCTGTATGCTAAATGTGGAGAAGAACATTTTCGAA
GCCCGTAGTTTAAGTTCCCTTGACGATAAAAATGTTGAGTTCTGTTATTT
TGGTTTTGCTGATCCCAGCGAGTATGAGCATCCAGCTTGGATAATGCGAA
ACTATGCTGCCTTTCTGCTTCAGCAATGTCCCTCTTTTGTTGGAAAACCA
TTGAAGTTTCTTGGCCTGCGACACAATCAACAAATGAACATCGATGACAG
CCTTGTATGGAAGGTGATTTCAGACTGAAGCTTGCGATCTTAGCCAAAGC
GAAAATTATAAAGTTCGTGGGCTGGGAGCTAATAAAATGGCCAAAATGGG
GCCAAGATGGTGTGCATGAGGGACAGCATGGATCCAGCAACTCGCTGAAA
ACTCTGGAAACCTGAACCTGAAACTAATTGGAGTGGCGCTTTGGTCCGAT
CTTCATTCTCGAAATCATCTCCCAAACAAATGCCTGGCTCTTTTGGAA
FMO06335.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg7-RA | 2395 | CG5489-RA | 84..1120 | 7..1043 | 4790 | 98.1 | Plus |
| Atg7-RB | 1873 | CG5489-RB | 282..598 | 728..1043 | 1210 | 94.1 | Plus |
| Atg7-RB | 1873 | CG5489-RB | 84..282 | 7..205 | 995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18624185..18624709 | 728..203 | 2580 | 99.8 | Minus |
| 2R | 25286936 | 2R | 18624763..18624961 | 205..7 | 995 | 100 | Minus |
| 2R | 25286936 | 2R | 18623918..18624128 | 938..728 | 820 | 96.7 | Minus |
| 2R | 25286936 | 2R | 18623694..18623783 | 1030..940 | 240 | 86.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:14:06 has no hits.
FMO06335.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:15 Download gff for
FMO06335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg7-RA | 80..1123 | 1..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:28 Download gff for
FMO06335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg7-RA | 84..1126 | 1..1046 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:47 Download gff for
FMO06335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg7-RA | 80..1123 | 1..1048 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:47 Download gff for
FMO06335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18623915..18624127 | 729..939 | 96 | <- | Minus |
| 2R | 18624185..18624706 | 206..728 | 99 | <- | Minus |
| 2R | 18624763..18624965 | 1..205 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:15 Download gff for
FMO06335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14511420..14511632 | 729..939 | 96 | <- | Minus |
| arm_2R | 14511690..14512211 | 206..728 | 99 | <- | Minus |
| arm_2R | 14512268..14512470 | 1..205 | 98 | | Minus |
