FMO06338.5prime Sequence
1148 bp (1054 high quality bases) assembled on 2008-09-15
> FMO06338.5prime
CAGTCGACATGTCGATTGTAAAGAAGTTGTCCTTCGATGCTGGCTGCGAG
GAGAAGGAGAAGTACACGGCCCAGAATGGCGATGATTACTATGGCCAGGC
GCACACCGTCGACCTGGACGTGGCCAGCAAGTACTCCAAGCCCAAGGAGG
CCCACTGGCTGGTGCGGCGCATATTCTTCCTCAGCTGGATTACCAGTTAC
GATCGAGAGCAGGCGTTCGCCGATTTGATTGCCGGCATCACCTTGGGCCT
GACCATCATACCACAAAGTATTGCTTATGCCGCGCTGGCAGGACTCTCCT
CGGAGTACGGCCTGTACTCCGCCTTCATTGGCTCCATCATCTATGTTTTC
TTTGGGACGATACCACAGGTGTCCATTGGACCCACCAGTCTGATGGCCAT
TCTCACCCTGCAATTCTGCGCCGACAAACCGGTGCAGGTGGTCATCGTGC
TGGCCTTCCTCGCCGGTTTGGTGGAACTGGCCATGGGTGTGTTCCAGCTG
GGATTCATCGTGAGCTTCATACCAGCTCCGGTTACCAAGGCTTTTACATC
CGGCACTGCGCTGATCGTGGTCTTTGCCCAGATCAAGAATCTCTTAGGTG
TTCGCATAAAGGGATTCCCCTCGATCGGTGACTTTTTCACCAATATCCGG
CCCACGGATGCCGCCATGGGAATCTCGTGCATGGTTGTGCTACTTTCGCT
GCGGCTACTGTCGCAAGTGAATTTCAAGCAGGACACGCCTGTTACGCGTC
GCCTTAAGAAGATCCTGTGGTACATCAGTATTTCCCGCAATGCTCTGGTT
GTCTTCTTCACTGGCCTTTTGGTTTTCATCTGGGTGAAGAAGAGCTCCAT
TGAGGCGGTCCCCTTTGCGCTTTCCTCAAGGTTCCTCGGCCATGCCCACA
ATCAAGCTGCCGCCCTTCGCCTTCGAGTATCAGATCGCACTATGTGTTCA
CGGATATCCTCATGAGCTGGGCAGCGGATTGTGTGTGCAATTGTGGCGTT
TGGCCATGTGCCATTGCAAGCTTCGTCAGGATGCAATCTGATGCCTCGCA
GGAAATGCTTACTTGGGTTGTGCAACATAGCGTTCTTCTCATGCATGCCA
CCTGCGGACCTCACCGTCGCGTGATTCGAATCTGGAGATCGAAGCAAT
FMO06338.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6125-RC | 2406 | CG6125-RC | 140..1233 | 9..1081 | 4950 | 98 | Plus |
| CG6125-RB | 2197 | CG6125-RB | 140..1233 | 9..1081 | 4950 | 98 | Plus |
| CG6125-RA | 2153 | CG6125-RA | 122..1189 | 35..1081 | 4805 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15404642..15405307 | 704..39 | 3330 | 100 | Minus |
| 3R | 32079331 | 3R | 15404078..15404357 | 978..704 | 1170 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:19:17 has no hits.
FMO06338.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:38 Download gff for
FMO06338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-RB | 133..1238 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:51:51 Download gff for
FMO06338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-RB | 133..1238 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:52 Download gff for
FMO06338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-RB | 136..1241 | 1..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:52 Download gff for
FMO06338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15404078..15404356 | 705..978 | 98 | <- | Minus |
| 3R | 15404642..15405306 | 40..704 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:38 Download gff for
FMO06338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11229800..11230078 | 705..978 | 98 | <- | Minus |
| arm_3R | 11230364..11231028 | 40..704 | 100 | <- | Minus |
