FMO06339.5prime Sequence
717 bp (714 high quality bases) assembled on 2008-09-15
> FMO06339.5prime
CAGTCGACATGAATCTAGGCCACTGGAATTTTCTCCTAGCTCTAATCAGT
TTACAAACGTTTTTTAACGCCTCCGCACAGATAAGCACTGTAAATAACAG
TTCGAAGGGATCAAACAACTCAAATATTTTCCATGAAGACACATTCAATA
GCACTTCGATTGACGTTCTGGACGCCTCAATACATTCAACACTGGTTGTA
CCTCAAACATATTCGACAGAAGCTGCAACAATATCAGGTGCTAGGTTCGC
AACCTCTGTTCCTGTTCAAAGTCCTGTAGACAACCCGTTAGATCCGGCGG
ACTGTTCTCAACGGGAAAAGTACAGAAAGCAACCAGTTGCAACACCATCG
TCTCGTTTAAGAAAATGCTGCCCACATGGAGAAAACTTAAATATATATCG
GGAAAATCAAAGCGATTCGATGTGCGACAACGGGCTCTTAAGCTTCGAAC
CGACTATAATAAGTGCAGTTCTGTTCGATAACTGCATTGAAGATTTGGAG
GTTGAGACTACGCTCGACTACGACATTGGAAATCCCGTGCAACAGTTCTC
TTTTGTACGACGACAAAGACGATGTTTTCTTTGTTCTGCAAGACGGTTCG
TTATTAATCATCGACAAAATTTGGAAACGAATCATACACTGTGAAGGAAC
ATTATTGCTTGGATATTGATAAGTCAGGACACTTGTTTGCCTTTTACATG
TGTAACCCAAGTGGAAG
FMO06339.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl14-RA | 2091 | CG32476-RA | 149..854 | 9..717 | 3455 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 248202..248612 | 125..535 | 2055 | 100 | Plus |
| 3L | 28110227 | 3L | 248674..248845 | 544..717 | 755 | 98.3 | Plus |
| 3L | 28110227 | 3L | 248001..248116 | 9..124 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:19:01 has no hits.
FMO06339.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:30 Download gff for
FMO06339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl14-RA | 141..854 | 1..717 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:51:55 Download gff for
FMO06339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl14-RA | 137..850 | 1..717 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:44 Download gff for
FMO06339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl14-RA | 141..854 | 1..717 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:44 Download gff for
FMO06339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 247993..248116 | 1..124 | 96 | -> | Plus |
| 3L | 248202..248621 | 125..545 | 99 | -> | Plus |
| 3L | 248676..248845 | 546..717 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:30 Download gff for
FMO06339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 247993..248116 | 1..124 | 96 | -> | Plus |
| arm_3L | 248202..248621 | 125..545 | 99 | -> | Plus |
| arm_3L | 248676..248845 | 546..717 | 98 | | Plus |
