FMO06340.5prime Sequence
1177 bp (977 high quality bases) assembled on 2008-09-15
> FMO06340.5prime
CAGTCGACATGACGCAGGCAACAGGTGATGCACGCATGCCAGACGAGGAA
AGCGACCTGCTGCAGATCAAGCCACTTGGTGCTGGCCAGGAAGTGGGACG
CTCCTGCATCATGTTGGAATTTAAGGGCAAGAAGATAATGCTGGACTGCG
GAATCCATCCGGGATTGTCCGGCATGGATGCCCTGCCCTACGTAGATCTA
ATAGAGGCGGATGAGATTGATCTGCTGTTTATATCACATTTCCACTTGGA
TCACTGCGGTGCCTTGCCTTGGTTTCTCATGAAGACCAGCTTTAAAGGCC
GCTGCTTTATGACCCATGCCACGAAAGCCATTTACCGATGGATGCTGTCC
GATTACATCAAGATCAGTAACATATCCACCGAACAGATGCTATACACGGA
AGCCGATCTGGAGGCCTCCATGGAGAAGATCGAGACGATCAATTTCCACG
AGGAGCGCGATGTGATGGGCGTACGCTTTTGTGCCTATATTGCTGGTCAT
GTTTTGGGTGCCGCCATGTTCATGATCGAGATTGCTGGCATCAAGATCTT
GTATACTGGTGACTTTTCGCGCCAGGAGGATCGACATTTGATGGCTGCCG
AAGTGCCACCGATGAAGCCGGATGTTCTTATCACAGAGTCCACCTACGGC
ACTCACATTCACGAGAAAAGAGAGGATCGAGAGAATCGATTTACCTCGCT
GGTGCAGAAAATTGTTCAGCAAGGCGGGAGATGCTTAATTCCAGTATTTG
CTTTGGGCCGTGCCCAAGAACTGCTACTTATTCTGGATGAATTCTGGTCG
CAGAACCCGGATCTGCACGAGATTCCCATCTACTATGCCTCCTCTTTGGC
CAAGAAGTGCATGGCTGTCTACCAGACGTACATCAATGCTATGAACGATC
GAATTCGACGACAGATTAGCTGTGAACATTTCCTTCGTTTTCCGCCACAT
TTCCAACTTGAAGGGTATCGATCACTTCGAGGATACGGACCCTGCGTAAT
CATGGCGTCGCCGGGTATGATGCAGTCGGGATGTCGCGAAGAGCTCCTTC
GAGAGCTTGTGCACAGATCCCAAGAACGGAATGATTATAGCCGGTTACTG
CTGAGCACTTTGGCCCATGCCGTTCCTCCGAACCCGAGGGAATCCCACCT
GTCGGCCAAACTTGCCGCTCCACATGT
FMO06340.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpsf73-RA | 2190 | CG7698-RA | 97..1274 | 8..1177 | 5355 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18662246..18663107 | 1101..239 | 4000 | 98.8 | Minus |
| 3R | 32079331 | 3R | 18663170..18663331 | 238..77 | 810 | 100 | Minus |
| 3R | 32079331 | 3R | 18663388..18663456 | 76..8 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:19:24 has no hits.
FMO06340.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:42 Download gff for
FMO06340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpsf73-RA | 66..1183 | 1..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:51:58 Download gff for
FMO06340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7698-RA | 66..1183 | 1..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:54 Download gff for
FMO06340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpsf73-RA | 90..1207 | 1..1115 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:54 Download gff for
FMO06340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18662228..18663107 | 239..1115 | 98 | <- | Minus |
| 3R | 18663170..18663331 | 77..238 | 100 | <- | Minus |
| 3R | 18663388..18663459 | 1..76 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:42 Download gff for
FMO06340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14487950..14488829 | 239..1115 | 98 | <- | Minus |
| arm_3R | 14488892..14489053 | 77..238 | 100 | <- | Minus |
| arm_3R | 14489110..14489181 | 1..76 | 94 | | Minus |
