FMO06341.5prime Sequence
1165 bp (1009 high quality bases) assembled on 2008-09-15
> FMO06341.5prime
CAGTCGACATGTCGTCGCCATGGGTTAAGACCAGCGAGCCTGTGCAGCAG
GTGAATCTGGCGGATATAATGTCGGAGCAATATGCCCACAAGTTGCACGA
CAAGGAGCTGCAGCGCCACACGGAGAAGCTGAAAAGACCGGACGAACAGA
TAGCACCCGTTTGGGGGTCGCAAGCCTCATCCCCGCCAGCGCCCAATGCG
CAGAGTATCCAAAGTGATGCGGAGGATTGGGAGGATTACTCTGCGCTCCT
CAATGACGAAGGAAACGTAGCGGAGGACATTCAGCTGCCGGAAGACAGCG
ATGCAGTTATTGCCCAGCTGTTGCAGTCCCAGTTCGATCACGAGTACAAT
GAGGAATTGCGTCGTATCGAGCGGCAGCAAAACAAGCAATCCAAGGTCAC
TGTTACCCTCAATAAGTTCCTACGTGATGGCGATGCAGAGTTCTTGCACG
ACACCGCGGAAGATGACTACGAAGAGGATGAATTGGAGCAACAGAAGCAC
GACTGGGATCGGTTCGAGGACAATGAACGGCAGCTTGACTCCATACCTCG
CTGCGGCTTTAAAGTTAACAAGGAGGGCGAGATGATAACAAAGCACGATC
CGCAGCTGTGCGCCGTGCGTAATGCCCAGCGCGTGATGTCCTTTCCGCCG
GAGTTTCCCACCGGTGTTGCTGCCGGTTTCGACATGAAGCTCTCCAATAA
GGTGTTTAACCAACTACGAGCCCATTCTCGACGAGGCCGCTCCGACAAGC
ACGAGAAAGTGGCCACCGCGGAGATGGGATTGGATGCGGGTACACGTTTG
CTGCTGTACAAGCTGATCAATAACCAAATACTGGAGCAGATCACGGCATT
ATATCCACGGGGCAGGGAGGCGGTCATCTTGCACGCCCATTCCGATGCGA
ACTATACGGCAGCAACGAGCATGGTCACAGAGTGGTGGTGCTCGTTCCAC
CGCAGCTTTGCCCCGGGGAGTGTGCATTAAAATCTTTAAAACCACGCTCA
ACGAGTCAAGCAGCGCGATAGAACATCAAGATGACTATTCGGGTCAGGAC
GCTTTAACCAAACAAACCACGAGTGATTATCAATATGTGGCCGAGAGGAA
TGCATATCTGATGAAGAATGCAAGCATGGCCTAACGTCGACGTGTTTGGC
TGAAGCAGGTCTGAG
FMO06341.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3008-RA | 2263 | CG3008-RA | 292..1429 | 9..1134 | 5030 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4883647..4884341 | 9..703 | 3460 | 99.9 | Plus |
| 2L | 23513712 | 2L | 4884389..4884786 | 700..1090 | 1225 | 93.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:02 has no hits.
FMO06341.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:39 Download gff for
FMO06341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3008-RA | 285..1429 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:51:59 Download gff for
FMO06341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3008-RA | 284..1428 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:26 Download gff for
FMO06341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3008-RA | 285..1429 | 1..1134 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:26 Download gff for
FMO06341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4883643..4884339 | 1..701 | 99 | -> | Plus |
| 2L | 4884391..4884835 | 702..1134 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:39 Download gff for
FMO06341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4883643..4884339 | 1..701 | 99 | -> | Plus |
| arm_2L | 4884391..4884835 | 702..1134 | 93 | | Plus |
