FMO06342.5prime Sequence
1136 bp (1016 high quality bases) assembled on 2008-09-15
> FMO06342.5prime
CAGTCGACATGGATTTTAATAATGACTTATCGCCTATTGATATTTTGACA
TTTATAACAGATGAACTGTTGCAAGCATACAAAAGCAGTAAAGGAGAAAA
TGAAAAGGCTGGGACAATTGTCAAGTTTCTTGACCGATGGAATGACGATA
TCTCCATTGCAAAACTCAAGGATCTCACTGTTGAATTTGAATCAGATTTA
GAGTGGTTCAATGTAAGTTGCCCCTTATCGATAAAAGGACTGCAAGGAAA
AGTTATCATATTAGACTTTTTCACATATTGCTGCATTAATTGTATGCATG
TGCTGCAAGAGTTGCACTTATTGGAAGAACGCTTTCCAATAGAAAGTGGT
GTTGTAGTAATCGGTGTTCACAGTCCTAAGTTTGAAAATGAACGCAATGC
GGCAAACATTCTGTCCGCTGTACAACGATATGGAATATCACATCCCATTG
TCAATGATTCACGATCTGGAATGTGGCGCGCTCTTGGAATTCGTTGCTGG
CCTTCTCTTTTGATTCTAAGCCCGACTGGTGTTCCGATGATGTTATTAAT
GGGTGAAGGGCATGGAAAATTCCTACAGGATTTTTTTTCTTCTGCCCTAT
CGTATTTTAGCCGTCAGGGTATAATTGACCATAGGGGTTTACCTTTAAAA
TTATTTAATGACTTTCAACCAGCATCTAACTTGCGTTTTCCCGCAAAGAT
TGTTCAAGGCCCTAATGGCCTGTATGCTATTGCTGATACGGGGAACAACA
GGGTGCTTGTGCTTACAGCATGCGGTGTGGTACAGCACAGAATTGGAGGA
CACCAGCCTGGTTTCGTGGATGGAGACCTAACAGTGGCACGGGTTAATAA
TCCTCAAGGCATTGCGTTTCTTATGAAAACGTTTTGATTGTAGCGGACAT
AAAACCCCGCCATTCGTCAGATCTCTCTAAAAATGCAATGGTGGAAACTC
TTGCTGGCACAGATTCAGGGAATGATCGATAGTGGACGTCTAGGACCATT
GCACCACTGTCGTCACCGTGGATGTTGCATATTCGACGAGGAATTGATAT
GTCTTCATCTTGATGAACGTACATACAGAACATATCTTTAATCATGCAGC
ACCCACGATTGGGCCATTCCGAAGGATATTGTGAAT
FMO06342.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12547-RB | 2672 | CG12547-RB | 57..1143 | 9..1076 | 4920 | 97.9 | Plus |
| CG12547-RA | 2225 | CG12547-RA | 57..1143 | 9..1076 | 4920 | 97.9 | Plus |
| CG12547-RC | 2322 | CG12547-RC | 204..1240 | 59..1076 | 4670 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4787510..4788349 | 1021..192 | 3715 | 98.1 | Minus |
| 2R | 25286936 | 2R | 4788400..4788586 | 195..9 | 935 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 21:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 6295..6332 | 51..14 | 118 | 78.9 | Minus |
FMO06342.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:30:26 Download gff for
FMO06342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12547-RA | 52..1148 | 1..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:52:01 Download gff for
FMO06342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12547-RA | 48..1144 | 1..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:56 Download gff for
FMO06342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12547-RA | 52..1148 | 1..1080 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:56 Download gff for
FMO06342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4787437..4788345 | 196..1084 | 97 | <- | Minus |
| 2R | 4788400..4788591 | 1..195 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:30:26 Download gff for
FMO06342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 674942..675850 | 196..1084 | 97 | <- | Minus |
| arm_2R | 675905..676096 | 1..195 | 97 | | Minus |
