FMO06343.5prime Sequence
352 bp (270 high quality bases) assembled on 2008-09-15
> FMO06343.5prime
CAGTCGACATGACCGAGAAGTACGACGGCAACGGTGACTTTTCCGCTTTC
AACGACGATGACAACGATTTTGGCGGCAAGCCTCGCAAGCCTGGTGGATC
TATTGGAGCACCAGGTGGCGCCCACAATGGCGACGCTTCCGCCCACGATC
ACGGCCATCATGGAGGAGATCCCGGCGGCAATGTCCAAATAAACGAGAAA
GCCAATGAGTACATACGCGATTGTATGGCGGAAAGAAATCGAATGGACAG
GAAGTTTCCCATTGCCGAGAAACTGCTGGAAGGCGAGATAGAAAAGGTCC
AGACCACAGGAAGGATTCCTTCCAGAGAGCAAAAGTATGCCGATATCTAT
AG
FMO06343.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qkr54B-RE | 3963 | CG4816-RE | 127..471 | 8..352 | 1725 | 100 | Plus |
| qkr54B-RD | 3482 | CG4816-RD | 127..471 | 8..352 | 1725 | 100 | Plus |
| qkr54B-RB | 2551 | CG4816-RB | 492..836 | 8..352 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17470609..17470886 | 8..285 | 1390 | 100 | Plus |
| 2R | 25286936 | 2R | 17470941..17471008 | 285..352 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:01 has no hits.
FMO06343.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:09 Download gff for
FMO06343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qkr54B-RB | 488..836 | 1..352 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:52:03 Download gff for
FMO06343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qkr54B-RA | 125..473 | 1..352 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:49 Download gff for
FMO06343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qkr54B-RB | 488..836 | 1..352 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:49 Download gff for
FMO06343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17470605..17470886 | 1..285 | 98 | -> | Plus |
| 2R | 17470942..17471008 | 286..352 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:09 Download gff for
FMO06343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13358110..13358391 | 1..285 | 98 | -> | Plus |
| arm_2R | 13358447..13358513 | 286..352 | 100 | | Plus |
