FMO06344.5prime Sequence
1168 bp (1030 high quality bases) assembled on 2008-09-15
> FMO06344.5prime
CAGTCGACATGAAAATGGGTAGCCAGTACATCGACGGGGCGAAATTAAAA
GCAAACAGCCACAGAAAGCGGCGATGCAGTCCGCTGCTTTATGGAATTAT
CTTGCTCTGCAAAGTGGCGATGATACCGGCAGCTGTTCCGGAATCGGAAT
TGGATGCAGGAGCCCTCTATAGTCAGCCCCTCACTACGATGGCGGGACAG
CCGCGCAACGATGACACATTCCGGCCCATCCTACCCATCGACATCAGTCC
GGAGTTCATTTCGAGGAATGTATTCACAAAGTCGGGCCAGTACAGAGTGT
TCCAGCCGGCGGAGAGCGAGAGTGATCTGCGCTTGGCGGTGGCCATGCGT
CGACGGAACTTTAAACACCCCTCGGATTCACCCAGAAAGCAGGAGTCCGA
AAGTTCGGCAGCCGCTTTTAAAAACCAAACCATTACCTCTATCGACGCCG
AACTAAAAGGTCTGGAGGATCTGCTCGTGGACTACGTGGAGCAGTTCTTC
AGCAACGGCAGATATGAGCCCACTCCTGGTTTGGTCCTGGCTCTTCAGCA
GAACCACTCGCACCCACAATCTTATACTGGCAAGCGCACCACCCGAAGCA
TTTTGGAGGACACCAACGTTGAGCTGAATGTTCCAAGGGCTTTTGAAAGC
GCCCGACTGCTTTTCTTTAGCGGTTTGAAGAAGGTGATGTGGCCCATCTA
TATGGGTTTGCAAGTGCTGAAGAGCGTGCTCTTCGCCATGTTCCTGCCAA
CCATCATCAGCAGTGTAAGCCGACTGATTGGCAAGGGCATCACTTCCGGC
TCGGCTGGGTCGGTGCCGTTGTTTATCCGCCCCATTGAGCCGCCACAAGA
ACTGGACTTCCCGGGACAACAGCATGAATTCCGATGATGACAGCAAATTT
TCCCTGGCGGACGAGGGCAAAACGCCAGCCGGCTACGAGTACAATGCAGA
GGCATCACAGCAGCAGGCGCATTATGCCCAGGTCAATGGGACTCGGTGAA
CCAGGCCACTTTGTCGCGCTATGGAAGGTCAGCAATGATGCAGACCACTA
TCTGAGTGCTCTGCAAAGCATGGCGCTGCCTCTTTCAAACCTCCAGAGCA
TGTCAGGAATCCTCACCGCCGGACTGGGTGGCGAACTCCAGGATGACGAT
ATCAAGCCGGCCGGAGAA
FMO06344.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi24-RA | 2629 | CG15589-RA | 531..1677 | 9..1149 | 5270 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6204445..6205110 | 9..674 | 3330 | 100 | Plus |
| 3R | 32079331 | 3R | 6205657..6205819 | 786..949 | 755 | 98.8 | Plus |
| 3R | 32079331 | 3R | 6205483..6205598 | 672..787 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 6205880..6206073 | 945..1133 | 450 | 89.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:17:37 has no hits.
FMO06344.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:37 Download gff for
FMO06344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi24-RA | 531..1659 | 9..1133 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:52:06 Download gff for
FMO06344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15589-RA | 529..1657 | 9..1133 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:42 Download gff for
FMO06344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi24-RA | 531..1659 | 9..1133 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:42 Download gff for
FMO06344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6204445..6205108 | 9..672 | 100 | -> | Plus |
| 3R | 6205484..6205597 | 673..786 | 100 | -> | Plus |
| 3R | 6205658..6205819 | 787..949 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:37 Download gff for
FMO06344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2030167..2030830 | 9..672 | 100 | -> | Plus |
| arm_3R | 2031206..2031319 | 673..786 | 100 | -> | Plus |
| arm_3R | 2031380..2031541 | 787..949 | 98 | -> | Plus |
