FMO06346.5prime Sequence
1120 bp (985 high quality bases) assembled on 2008-09-15
> FMO06346.5prime
CAGTCGACATGGAGAAGCTGCTGCTGACCCAGCTTCTGTTTCTGCTCCTG
ATCCCACTGATCCACTCCCAAAGGAGCTCCCAACTGGACGAACTGCGGCG
ACTGGGATTGGGAAATGTCGTCAATGTGCCATTCTTCAGCGATGTTCCCC
AAAGAAACTATGACTTCATAATAGTTGGAGGCGGAGCTGCTGGCTGTACA
TTGGCCGCTCGTCTCTCGGAGAATCCCAATTGGAGTGTGTTCCTTATCGA
AGCCGGAGGAGTGGAGAACATAGTGCATCAGGTGCCATTACTGGCGGCCC
ATTTGCAGTCGACTGCCTCCAATTGGGGCTACAACTCGACGCCACAACGC
CATGCCTGTCGTGGAATGCCCGATAACAAGTGTGCCCTGCCGAGGGGCAA
AGTTCTGGGTGGCACTAGCTCGATCAATTACATGATCTACAATCGGGGCA
ATCGTAGGGATTTTGATGCCTGGGCGGCAGCTGGAAATCCCGGCTGGAGT
TACGACGAGGTGTTGCCCTACTTTCTGCGAAGTGAGCATGCACAGCTTCA
GGGATTGGAGCACTCGCCATATCACAATCACAGTGGTCCCTTTGAGTGTG
GAGGATGTGCGACACCGGACGCGACTTGCACACGCCTACATTAGAGCTGC
CCAGGAGGCGGGTCATCCGAGAACGGACTACAATGGTGAATCCCAGCTGG
GCGTTTCCTATGTGCAGGCCACCACACTGAAGGGCAGGAGGCACAGTGCC
TTTCGTGCCTATATTTGAAGCCCATAAGATCTAGGCGTCATAATCTGCAC
ATTCTAACACTGGGCTAGAGTCACCCGAGTTCTGATAGATGCAGCCACCA
AGTCCGCCTATGGGAGTGAGGTGACCCATCAGGCAGAGCTTTAGGTGAAA
GCCCGCAAGGAAATCATTCTATCGGCGGGTGCCTCAACTCTCCACAGTTG
CTGATGCTGGTCGGGGATGGGGCAGAAAATAACCTCAAGGCATTGGAATC
CCCTGATCCAGGCATTGCCAGTGGGTAAAAGATGTCGATCACATGTGCTC
ACTTTGGACCACTTTTGGGACAACCACGGCCGAATCTATTTGCGCTCAAT
TGGGCGCACGGGGCCAAAGA
FMO06346.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9522-RA | 2191 | CG9522-RA | 30..1141 | 8..1109 | 4875 | 97.1 | Plus |
| CG12539-RA | 2085 | CG12539-RA | 194..639 | 156..602 | 1195 | 85.1 | Plus |
| CG12539-RA | 2085 | CG12539-RA | 953..1113 | 916..1071 | 335 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14847578..14848497 | 1060..144 | 3775 | 96.6 | Minus |
| X | 23542271 | X | 14844072..14844508 | 592..156 | 1135 | 84 | Minus |
| X | 23542271 | X | 14848643..14848779 | 144..8 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:19:09 has no hits.
FMO06346.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:34 Download gff for
FMO06346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9522-RA | 21..1152 | 1..1119 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:51:43 Download gff for
FMO06346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9522-RA | 17..1148 | 1..1119 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:47 Download gff for
FMO06346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9522-RA | 21..1152 | 1..1119 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:47 Download gff for
FMO06346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14847510..14848496 | 145..1119 | 96 | <- | Minus |
| X | 14848643..14848783 | 1..144 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:34 Download gff for
FMO06346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14741543..14742529 | 145..1119 | 96 | <- | Minus |
| arm_X | 14742676..14742816 | 1..144 | 97 | | Minus |
