FMO06347.5prime Sequence
1140 bp (1024 high quality bases) assembled on 2008-09-15
> FMO06347.5prime
CAGTCGACATGCCGCCGTTTAATTTCATCAAGCAGGAGATCCGTCCCAAC
ACCATTCCGGACTTAAAGGTGGATGCCACATTTCGGAAGGTGGCTAAACA
TGCGATTACCTTTGCGATTTGGAAGATAGACGAGGATCGCCTGGAGGCGG
TACAAAGATCACATTATGGCACCTTCTACGATAGCTGCGCCTACATTATC
TATGCAGCAAGTTTGTCGGGGCATTATGCCAATCACGAAACCATCACACG
CGAACAGAAGCCGAATGTGAGTCTTGAGCGATATATCCACTACTGGCTGG
GCAAGAATGTTAGCGAGCAGAATCGATCCAATGTTGTTCATAAAATCCAG
GAGCTGGACTCGTATCTGGGAAACATATCCTCTATTTACCGAGAGACCCA
GAATCTGGAGAGTGCGAGATTCCTTTCGTATTTCAAGAAGGGTTACGATG
TTCGATCGGGAGCACTAATAAGCGCGCCCCAGAGGCCACGACTTTTTCAA
TTGTACGCCCGCAAATGGTTGCGATCCATTGAGGTGGCCACCATCGATTG
GTCGCACTTTAACTCGGATTACGTAATGGTCCTGCAAACGGATAATCTTA
CCTACGTCTGGATAGGGCGCTCCAGTTCAGGAATTGAACGACGAAGTGCC
CTCGACTGGGTCCAAAAGCACTGCAGTGGATCGCCAATCACTATAGTCGA
TGATGGATATGAGCAGGCCATGTCCCAGGAGCACAAGGAGCTGTGGAACA
CCATGCTTCCGCTAAAGAAACGCATGGTCTGTCAGCCAGTCAGTTGGTCA
GCGAATACGCCGACTACAATAGCAATAAGTTCCGCATCTATAGTGCAATC
AACGGGGAAGGCTGCACCTGGATCATTGGATGTGGGCATGCCAGCAAAGA
TGATCTAAGCGATGCCCATGGAGTCTATTTACTGACAACTACGTCAGAGT
ATTTGGTTGTGGTAGGAGCCAGCACCGCAGGCAGATGCCCTTTCTGCCAT
GGAAATGGGAGAGCTTTGTTAAAAGAGAATATCCCGGATAATACGTTGTG
GTGCTGTCCTCCAGGTCACGAGCCGTGGAGTTAGCCGTCTCTTTGCACTG
TTTATGTTTTGCCAGAAACCCAGGCCTAAGCCATGTTCCA
FMO06347.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qua-RA | 3266 | CG6433-RA | 448..1553 | 9..1096 | 4975 | 97.8 | Plus |
| qua-RB | 3306 | CG6433-RB | 514..1593 | 35..1096 | 4845 | 97.8 | Plus |
| qua-RC | 3318 | CG6433-RC | 514..1605 | 35..1096 | 4715 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17488791..17489369 | 1017..449 | 2385 | 97.8 | Minus |
| 2L | 23513712 | 2L | 17489693..17489904 | 245..34 | 1060 | 100 | Minus |
| 2L | 23513712 | 2L | 17489431..17489633 | 448..246 | 1015 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:40:19 has no hits.
FMO06347.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:06 Download gff for
FMO06347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qua-RA | 448..1553 | 9..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:51:45 Download gff for
FMO06347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qua-RA | 443..1548 | 9..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:31 Download gff for
FMO06347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qua-RA | 448..1553 | 9..1096 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:31 Download gff for
FMO06347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17489431..17489633 | 246..448 | 100 | <- | Minus |
| 2L | 17489693..17489902 | 36..245 | 100 | <- | Minus |
| 2L | 17496735..17496761 | 9..35 | 100 | | Minus |
| 2L | 17488704..17489369 | 449..1096 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:06 Download gff for
FMO06347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17488704..17489369 | 449..1096 | 96 | <- | Minus |
| arm_2L | 17489431..17489633 | 246..448 | 100 | <- | Minus |
| arm_2L | 17489693..17489902 | 36..245 | 100 | <- | Minus |
| arm_2L | 17496735..17496761 | 9..35 | 100 | | Minus |
