FMO06348.5prime Sequence
1154 bp (982 high quality bases) assembled on 2008-09-15
> FMO06348.5prime
CAGTCGACATGAAGCTTTGGCTAGGCATTTCTTTGGCTCTGTTGGCCCTG
GGCCAAACCCATGGTAGCATCTTTGAGAGGACTTTCAAAAGGATCCACGA
GGAGCCACCACTGCCAACCACTCAGAATCGAGCTGATGTAGTTCAAACCC
TTTGGATTGAACAGAAGCTGGATCACTTCGACCCGGAAGAAACGCGCACA
TGGCAAATGCGCTATATGCTCAACGATGCACTTTACCAGTCTGGAGCACC
ACTTTTTATTTATCTTGGCGGAGAATGGGAGATCTCATCGGGCAGAATAA
CCGGCGGTCACCTATACGACATGGCCAAGGAGCACAATGCTCTTTTGGCC
TACACAGAGCATCGCTACTATGGCCAAAGCAAGCCCTTGCCTGATCTATC
GAACGAAAACATAAAATACCTAAATGTTAATCAGTCCCTGGCCGATCTGG
CTTATTTCATAAACACCATCAAGCAAAACCACGAAGGTTTGTCCGATTCC
AAGGTCATTATTGTTGGAGGTTCCTACTCTGCCACTATGGTCACCTGGTT
CAAGAAGCTCTATCCCGATCTGGTGGCTGGAGGTTGGGCTTCCAGTGCTC
CGCTCCTTGCCAAGGTCAACTTTGTTGAGTACAAAGAAATCACTGGCCAA
TCCATCGAACAAATGGGTGGATCTGCCTGCTACAAGCGAATTGAAAACGG
CATTGCCGAGATGGAGACCATGATAGCCACCAAAACGAGGTGCAGAGGTC
AAGGCCCTGCTCAAGTTGTGCGAACCCTTTGATGTCTACAGCGATCTGGA
TGTTTGGACTTTGTTCAGCGAGATTTCCGATATTTTTGCGGGCGTGGTCC
AGACTCACAATGCTGGGTCAAATTGAGGGTTGTTTGCGAGAAGATAATGC
CCGGTTCGAATGATCTTATTGGCGTTGCTGGATATTTGTTGGATGTATCG
AGGAAAGCGGTGCCAAGTGCTACGACCTTAGCTATGATGCAATTACTGCA
TAACTTCTGGACAACTAATACAATGGCACCATTATGCGTCAGTGGATCCT
CCAGAACTGCATGGAGTATGGTGGGTTCGAAACTCCTGGTCCAGGCCAAA
CATTGTACACAATTTCCTGTTTACTAATTAATCACCATGTGTGCCGATTT
CATG
FMO06348.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3734-RB | 1536 | CG3734-RB | 45..1195 | 4..1150 | 5065 | 96.7 | Plus |
| CG3734-RA | 1619 | CG3734-RA | 128..1278 | 4..1150 | 5065 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19388515..19388750 | 392..627 | 1180 | 100 | Plus |
| 3R | 32079331 | 3R | 19388811..19389043 | 627..860 | 1120 | 99.6 | Plus |
| 3R | 32079331 | 3R | 19387994..19388194 | 9..209 | 990 | 99.5 | Plus |
| 3R | 32079331 | 3R | 19388272..19388454 | 209..391 | 915 | 100 | Plus |
| 3R | 32079331 | 3R | 19389108..19389276 | 866..1034 | 615 | 93.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:13:13 has no hits.
FMO06348.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:58 Download gff for
FMO06348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3734-RA | 125..1178 | 1..1055 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:51:48 Download gff for
FMO06348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3734-RA | 127..1180 | 1..1055 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:02 Download gff for
FMO06348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3734-RA | 125..1178 | 1..1055 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:02 Download gff for
FMO06348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19389104..19389276 | 861..1034 | 94 | -> | Plus |
| 3R | 19389343..19389363 | 1035..1055 | 95 | == | Plus |
| 3R | 19387985..19388194 | 1..209 | 98 | -> | Plus |
| 3R | 19388273..19388454 | 210..391 | 100 | -> | Plus |
| 3R | 19388515..19388750 | 392..627 | 100 | -> | Plus |
| 3R | 19388812..19389043 | 628..860 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:58 Download gff for
FMO06348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15214237..15214472 | 392..627 | 100 | -> | Plus |
| arm_3R | 15214534..15214765 | 628..860 | 99 | -> | Plus |
| arm_3R | 15214826..15214998 | 861..1034 | 94 | -> | Plus |
| arm_3R | 15215065..15215085 | 1035..1055 | 95 | == | Plus |
| arm_3R | 15213707..15213916 | 1..209 | 98 | -> | Plus |
| arm_3R | 15213995..15214176 | 210..391 | 100 | -> | Plus |
