FMO06349.5prime Sequence
1073 bp (960 high quality bases) assembled on 2008-09-15
> FMO06349.5prime
CAGTCGACATGACGAGATGCAGTCTTGTATTGGGTCTCCTGCTGGCCCTG
GGCAACCTGATTCACGCCAGTAATATCACTGATAAAGTTTTTGCAGACAT
TAAAGAGGGCATTGTGGCAGCTTTCGGAGATTTCAATTCCGACGAACTCA
CGGATGTTTTTGTAATTCGCGATGGGATGAAGAGGTTGCAGATACTCTTC
GGGCACTATACGGAGCCTCTGCTTAAACTGGGACCAGACTGCCAGTACGG
AGATAAGACCATTGTTAGTGTTATACCTGGAGATTTTGATGGCGACGCCC
TGATGGACGTGCTGGTAAACCTGAAGGGGAAGGACGAGGAGACCTACGAG
GTGCACATCAACTGGGGCAATACCACCGAACTGAAGTGCTCCAATAAGTC
ACTTTTTACCAGTAAAGGAGAGGTAATGGCCCTGGACTTTAACCGCGATA
TGATTATCGATTTATACGGACTTGATTCTGCGGAAAGGCGTACATTCTGG
ATATTCAACAGCAGTAGGCTTCCGCCGGAGGCTGTACACCAAGCAGAACC
CACGGAGTTCAAGGAAAACTTAAGCATCCCCAATGCAAATGCCTATCTCG
ATCTGAACGGCGACTTCTTGGCCGATCTGTTCTTGCAGACGAAGAGCTCC
TACGAAATATGGCACGGCATCAACGAGCGAGACAAGCAGAGAATTTCAGC
TACCAATATCAAATTAAGTTCCAGCCGATCGGAGGCAATGATTATTACAT
CGGTCAAGGCTGTGTTTCATGGGACTTCGAGCTAAAAGGCGTGCAAAACA
TTGTGGTTTCCGTTTTTGCATCCCTATCCAATTGCCGGAACTCCTCAATC
ATGGTGCATGATGGCACAGAATTTCGTAATCTCCATGTAAACTTCCGCGA
TCCCCAGGGCGTCACTTTGGGCCTTGTGCCCCCGTGTTAGATGATGTTTA
CTTGCAACCATTCGGCAGGAAGGGGGACTCCACTGGATGGGTATCCTGAT
CTCTGGTTACTTTGCACCATAATGTGGGAAAGCCATGGATGCAAAGTTCT
GCTAAAAAGTGTTCCTGGCCAAC
FMO06349.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7739-RA | 2281 | CG7739-RA | 131..1195 | 9..1066 | 4590 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15561867..15562684 | 1016..201 | 3280 | 96.6 | Minus |
| 3L | 28110227 | 3L | 15562742..15562935 | 202..9 | 970 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:45:19 has no hits.
FMO06349.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:22 Download gff for
FMO06349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7739-RA | 123..1162 | 1..1035 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:44 Download gff for
FMO06349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7739-RA | 121..1160 | 1..1035 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:27 Download gff for
FMO06349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7739-RA | 123..1162 | 1..1035 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:27 Download gff for
FMO06349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15561845..15562683 | 202..1035 | 96 | <- | Minus |
| 3L | 15562743..15562939 | 1..201 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:22 Download gff for
FMO06349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15554945..15555783 | 202..1035 | 96 | <- | Minus |
| arm_3L | 15555843..15556039 | 1..201 | 98 | | Minus |
