FMO06350.5prime Sequence
1143 bp (954 high quality bases) assembled on 2008-09-15
> FMO06350.5prime
CAGTCGACATGCGGTCGTGGCCTGGCCTTTTCTGGCTGCTGACCCTGGCG
CTCCTGGCGGATGGAGGTCGTCGCGAGTCCCAGCTCCGGATCGGCAAGGC
CATCAATATATTCCTGCGCTATGGCTACCTGGGAATCTCCATGCGTGTGA
TACCGCTCAATGACAACTCGGAGCCGGATCGCTGGGTGTTTAAGGAGCCC
ACCAAAAACATCTATAGGAATCTGAGTGGCCTGGCGGAGAGTCATGAAGA
CACCACGCCCGGAATCTTTCATGGAGACTTTCACATGGAGTTCTGCGAGA
ATCGGAGGCAACTGTTCCAGGCCTACTTCCGTGACTTTTCCATTGAGCGA
ATGGACAAACCGTGGGAGGCATTTACTGGCGGATGGTTTCCGGATAATGC
GGCCAAGAAGCTGGGCATCAATACATCTTTCATCCAAGGCGATTACTCGT
ATGTTTTGGTGAGGGTGGTGCGCTTCAGGGAAACGGGGCGTCTTAACGCT
GAGATTCCGGTGCACCAACCCTTGGAGCCGGATGTGCGATCGAGAATGGA
TCAACTGCAAATCGGAAATATAACTTCCGCAGTGCGATTTATGGAAGATG
TGGGCACCCACTACGTAAACTCATACACCACCGGCAATTCGCTGTATCAG
GTGTTTGTGTACAGCAGGAAGAACTACAGCATGATCAAGAGCGAATCAAG
AGTAAAGGTCTGAACGGACTGTCCAAGTTGGATCTTTACAACTACTTTGC
GCCCTGGTTTGCCGCCCATCTGGGCCAGATTCGATCGGCTAGTGCCAATG
CTACAGTGGAAAGATGGGCGAGAAGGAAGCTGCAGTACGAGTACTATGTG
GTCAAGTATGTGACCCTGCTGAAACTGCACGGTAATAGTACTCTACTGCG
ATCCCTGACTCGCTGCTCGGCACCGATGCCATAATTGCAGTTGGACCTCC
AGTCGCTGAAGCTCATTCTTCCGGGGAGGAGCGGAAAGGAGAGCTTGTTA
CCACGAGGTTCTCGACAACAATGTGAAGCCTCTGGGAGCTTAACTTGCCG
ACAAGTCATCCCACCGATCAGCCTTTCTAAACATTCGTTTGGGCCGCGGC
CAGTAGTGTCTATTCTATCCTAATCTATCATATCACACTAGCC
FMO06350.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tsl-RC | 2059 | CG6705-RC | 760..1815 | 9..1065 | 4945 | 98.4 | Plus |
| tsl-RA | 1871 | CG6705-RA | 572..1627 | 9..1065 | 4945 | 98.4 | Plus |
| tsl-RB | 1375 | CG6705-RB | 76..1131 | 9..1065 | 4945 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21778358..21779204 | 1065..218 | 3700 | 97.1 | Minus |
| 3R | 32079331 | 3R | 21779552..21779761 | 218..9 | 1050 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:04:59 has no hits.
FMO06350.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:11 Download gff for
FMO06350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tsl-RB | 71..1138 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:45 Download gff for
FMO06350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tsl-RA | 565..1632 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:36 Download gff for
FMO06350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tsl-RB | 71..1138 | 1..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:36 Download gff for
FMO06350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21778351..21779203 | 219..1072 | 97 | <- | Minus |
| 3R | 21779552..21779765 | 1..218 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:11 Download gff for
FMO06350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17605274..17605487 | 1..218 | 98 | | Minus |
| arm_3R | 17604073..17604925 | 219..1072 | 97 | <- | Minus |
