Clone FMO06351 Report

Search the DGRC for FMO06351

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:63
Well:51
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5359-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06351.5prime Sequence

297 bp (-60 high quality bases) assembled on 2008-09-15

> FMO06351.5prime
CGATGGTTGGAAAATCAAGAAAAGCGGAAAAGCCCGGCGACCAGCCCACC
GCCTATAGCATGCGACCGGCCTTTGGGGAGATGTTTCCCCTGCCCTCCAT
CTAGATCATAATGAACAACGTTATGGCCGAGAAACTCAAAGACAAAACCT
ATGACATGGACGTCGCCAAGAAGTGGACCAGTGAGATCGCCGACGAGGTG
AACCAGCAGATAGCCAGCAGCTCCCTGTTGAAGCGGTACAAGCACGTGGT
TCATGTGATGCTAGGCCAGGAGCTGGGTGCGGGGGCCACTTACAACT

FMO06351.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5359-RC 1241 CG5359-RC 195..493 1..297 1340 97 Plus
CG5359-RB 713 CG5359-RB 195..493 1..297 1340 97 Plus
CG5359-RA 1244 CG5359-RA 195..493 1..297 1340 97 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10000726..10000884 297..139 735 97.5 Minus
3R 32079331 3R 10000940..10001075 141..7 585 97.1 Minus
Blast to na_te.dros performed on 2014-11-28 21:50:50 has no hits.

FMO06351.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:04 Download gff for FMO06351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 195..493 1..297 96   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:47 Download gff for FMO06351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 194..492 1..297 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:54 Download gff for FMO06351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 195..493 1..297 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:54 Download gff for FMO06351.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10000940..10001082 1..141 96   Minus
3R 10000726..10000881 142..297 97 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:04 Download gff for FMO06351.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5826448..5826603 142..297 97 <- Minus
arm_3R 5826662..5826804 1..141 96   Minus