FMO06352.5prime Sequence
1166 bp (1055 high quality bases) assembled on 2008-09-15
> FMO06352.5prime
CAGTCGACATGAAATCCAATCCGGCCTCGGATCACGTCTACTTCAACGAC
GGATTCAAGTGCTCCACGATCAGCATCAGCACCAATCTCACCGAACCCAA
TGGGAGCAGCAACAGCGTGGGATCCCAGGGATCCAAGGAGTTTATACTCA
CTGAAGACGGCAAGAAGGTGAAGCCAACAGTGAGCACACTGGACTGCACA
CGCAGTTGGCTGCAGGATTGCCAGCGGCGCACCTTCAATCGCAAGACCCT
GCACAAGAGACTCCCGATCCTCGGATGGCTCCCCAAGTACAACAGCCAGG
ATGCTGTGGGCGACCTGGTGGCGGGCATCACAGTTGGTCTCACCGTCATA
CCACAGGCACTGGCCTATGCGGGAATAGCAGGACTGCCCGTAGCCTATGG
CTTGTATGCCTCCTTTGTGGGCTGCTTTGTGTACATATTCCTGGGCAGCT
GCAAGGATGTACCCATGGGGCCATCTGCGATTGTGGCCCTGCTTACTTAT
CAGGCTGCTCAAGGATCTTGGCAGAAATCGGTGTTGCTCTGCCTGCTCAG
TGGAATTGTGGAGCTGCTGATGGGCCTCTTCGGACTGGGCTTCCTGATTG
ACTTCGTCTCCGGACCAGTTTCCTCGGGCTTCACCTCCGCCGTCTCGCTG
ATCATCCTCACCTCGCAGATCCAAAGTGTGCTGGGCATCACGGCCAAGGG
CAACACCTTCGTGGAGATCTGGACGCAAGTCTTCCACAACATCGAGCACA
CAAAGGGCAGGGGACACGGTACTAGGGCTAACCTGCATTGTCATCCTGCT
GTTGATGCGCAGTCTGTCTTCCTGTCGAATTGGACCAGTCGACGAGAAGG
AATGCTCATCCTTCCAGCGGGCTGTGAACAAGATCCTTTGGATCGTGGTA
CTGCTCGAAATGCCATTCTGGTGTCGTTTGCTGCATCATGGGCTATATGC
TCAACACGAGGAGCACGGAGCTCCGTTTCGAGTGGTGGGAGAGATACACC
GGGCTCCCCAGCATCAGTTGCACACATCGTGACTGCAATGAAACAGCAAT
GATGGCGAGGATCTGAAATGTCAAGCATGGTCGCTGTGTGATCCTGGTTC
CCGCTATGAAACTAGCATCTCGCAAGCGTTTGCCATGCAAGCCATGTATG
CTCAGGATGATTGCCA
FMO06352.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Esp-RB | 2732 | CG7005-RB | 589..1642 | 9..1051 | 4930 | 98.6 | Plus |
| Esp-RA | 2371 | CG7005-RA | 228..1281 | 9..1051 | 4930 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24848533..24849156 | 396..1015 | 2815 | 98.6 | Plus |
| 3R | 32079331 | 3R | 24848215..24848462 | 148..395 | 1240 | 100 | Plus |
| 3R | 32079331 | 3R | 24847238..24847376 | 9..147 | 695 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:20:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6824 | 44..116 | 113 | 61.6 | Plus |
FMO06352.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:01 Download gff for
FMO06352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Esp-RA | 228..1238 | 9..1015 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:48 Download gff for
FMO06352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Esp-RA | 225..1235 | 9..1015 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:25 Download gff for
FMO06352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Esp-RA | 228..1238 | 9..1015 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:25 Download gff for
FMO06352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24848215..24848462 | 148..395 | 100 | -> | Plus |
| 3R | 24847238..24847376 | 9..147 | 100 | -> | Plus |
| 3R | 24848533..24849193 | 396..1045 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:01 Download gff for
FMO06352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20672960..20673098 | 9..147 | 100 | -> | Plus |
| arm_3R | 20673937..20674184 | 148..395 | 100 | -> | Plus |
| arm_3R | 20674255..20674915 | 396..1045 | 97 | -> | Plus |
