FMO06353.5prime Sequence
1146 bp (1035 high quality bases) assembled on 2008-09-15
> FMO06353.5prime
CAGTCGACATGACGGCAATAATACTCCTGGCTTGCCACTCGGTTCGCGAA
CTCGTCGATCTGTCAGATGCTCTGTGGCAGAACACTTTTAATATCGAACG
AAGTTTAAACTATTATCGCATCAAGCGCCGTTTGGAACTGTTTCGATTTC
ATTGCCGCGAGCTTTGGTTGCGTCAGGTGTCAAAAACATCCGATCCAATG
CATCGGAAGGCAGGCATAGATTTTGCAGCCATTGAGGCGGGTGCAGACTG
TGTCCTAAATATGGATGCCTTTGACGATACGACAACGGAACTACACAAGA
GGTTTTTACAGGCGGAGGGCACAAGACCCTTTCCTTCGGATTGCATCAGC
GGCATCGAGGTGGTGGATGGAAATGAATTTAAAGCCTCATTTTACGAATA
TGCAGATGCTGTGCCAAAATATTTTAACGACCAAATAGGGAAATTGAGCG
AAGGGATAAGTTTCACGGTGACTGGGAATCTCTCTGTAAACTGCGAGAGG
TTTTCCATCAATCTGGTTTATAACAATGACTCTCGAGATGTGGCGCTCCA
CATTAATCCACGGTTGCCACAAAACTATATTGTCCGCAACACCAAAGTAC
AGGACATTTGGGGAAACGAGGAAGTGTCCTCGGCATTGCCGTTTCTACTA
AGTCGAGGCGAGGAGTTTTCCATTCAAGTGCTAGTTACTGAGGCATGCTA
TATGATATCGGTAAACGGACAACACTTTGCAGCGTACACTCATCGAATCC
CTTATAGGGATGTTCGCATTCTGGAAGTGAAGGGAGATGTAAGTAACGTG
GAAATGAAGCGAACTTTGGTCTTAAAATATCCTGAGCGATTACCCCAGTC
AGAGGCTAATAACATTGAGCTTCACATAGATGATGGGATTAATGAAATTG
ATGCCAGCGTTGAGGAGACTGTTAAAATACCTCATGAGTGTGCATTATAG
CGCCCGAACACACAGTCTGACAGTCGCTAGCGTACAATAGGTCGAATGAT
CTTGGCTACTTTGCTATATGAGCATGCCACAAATTCGTGGTCGATGTCGA
TGCTGAGATGATGAGAGTGCGATTACTCCCACTGGTTTAATTACCTGCAA
CAGGCAGACAATGACCATCAGTAATGCATCAATTACCAGTTGAGCA
FMO06353.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| galectin-RA | 1841 | CG11372-RA | 217..1339 | 9..1104 | 4915 | 97.2 | Plus |
| galectin-RE | 1458 | CG11372-RE | 21..956 | 196..1104 | 3620 | 94 | Plus |
| galectin-RF | 1536 | CG11372-RF | 287..1034 | 384..1104 | 3040 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 75076..75555 | 498..974 | 2235 | 99.2 | Plus |
| 2L | 23513712 | 2L | 72603..72978 | 9..384 | 1880 | 100 | Plus |
| 2L | 23513712 | 2L | 74903..75020 | 384..501 | 590 | 100 | Plus |
| 2L | 23513712 | 2L | 73505..73693 | 196..384 | 585 | 87.3 | Plus |
| 2L | 23513712 | 2L | 73410..73470 | 48..108 | 185 | 86.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:48 has no hits.
FMO06353.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:03 Download gff for
FMO06353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| galectin-RA | 209..1221 | 1..1006 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:49 Download gff for
FMO06353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| galectin-RA | 208..1220 | 1..1006 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:15 Download gff for
FMO06353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| galectin-RA | 209..1221 | 1..1006 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:15 Download gff for
FMO06353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 72595..72977 | 1..383 | 98 | -> | Plus |
| 2L | 74903..75018 | 384..499 | 100 | -> | Plus |
| 2L | 75078..75591 | 500..1006 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:03 Download gff for
FMO06353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 72595..72977 | 1..383 | 98 | -> | Plus |
| arm_2L | 74903..75018 | 384..499 | 100 | -> | Plus |
| arm_2L | 75078..75591 | 500..1006 | 98 | == | Plus |
