FMO06354.5prime Sequence
1125 bp (1006 high quality bases) assembled on 2008-09-15
> FMO06354.5prime
CAGTCGACATGGCTGGACGCGATGCGGCTTCCAATCAGTTGATTGACTAC
AAAAACTCCCAAACGGTTTCTCCTGGTGCCATTACCACCGGCAATGGAGC
ACCCATTGGAATCAAGGATGCCTCCCAGACGGTTGGTCCGCGAGGACCTA
TCCTGCTGCAGGATGTGAACTTCCTGGATGAGATGTCGCACTTCGACAGG
GAGCGGATTCCAGAGCGTGTCGTGCACGCCAAGGGAGCTGGTGCTTTTGG
TTACTTTGAGGTGACCCATGACATCACCCAGTATTGTGCCGCCAAGATTT
TCGACAAGGTCAAGAAGCGCACTCCACTGGCCGTGCGATTCTCCACCGTG
GGTGGTGAGAGCGGATCTGCGGACACCGCCCGCGATCCTCGAGGATTTGC
CGTCAAGTTCTACACTGAGGATGGCGTCTGGGATTTGGTTGGCAACAACA
CGCCGGTCTTCTTCATTCGCGACCCGATCCTATTCCCCAGCTTCATTCAC
ACCCAGAAGCGCAACCCGCAGACGCATCTGAAGGATCCGGACATGTTCTG
GGACTTCCTCACCCTGCGACCGGAGTCCGCTCACCAGGTGTGCATCCTGT
TCAGCGATCGCGGCACCCCCGACGGTTACTGCCACATGAACGGCTATGGC
TCGCACACCTTCAAATTGATCAACGCCAAGGGCGAGCCCATCTATGCCAA
GTTCCACTTCAAGACGGACCAGGGCATCAAGAATTTGGACGTGAAGACCG
CCGATCAGTTGGCTAGCACTGATCCGGATTACAGCATTCGCGATCTGTAC
AACAGGATCAAGACCTGCAATTTCCCAGTTGGACGATGTACATTCAGGTC
ATGACCTACGAGCAGGCCAAGAAGTTCAAGTACCACCCCTTCGATGTCAC
CAAGGTCTGGTCGCAAAGAGTACCCTCTGATTCCTGTGGCAAAATGTTGC
TGGATCGCAATCCCAAGAACTACTTTGCTGAGTGAGCAGATCGCCTTCAG
TCCCGCTCACCTGTGCCCGGCGTTGAGCCTTCTCCGGACCAATTGCTTGC
ATGTCGTCTGTTCTCTTACTCGACCCCATCGCATCCGCTTGGAACCGAAC
TACTTGCAAATCCCGGTGAACTGGC
FMO06354.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cat-RA | 1993 | CG6871-RA | 183..1306 | 9..1123 | 5125 | 97.8 | Plus |
| CG9314-RC | 1893 | CG9314-RC | 227..1160 | 112..1038 | 720 | 73.5 | Plus |
| CG9314-RA | 1806 | CG9314-RA | 227..1160 | 112..1038 | 720 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18826337..18827258 | 65..982 | 4370 | 99 | Plus |
| 2L | 23513712 | 2L | 8705798..8706427 | 112..741 | 555 | 72.5 | Plus |
| 3L | 28110227 | 3L | 18827359..18827501 | 984..1123 | 330 | 85.3 | Plus |
| 3L | 28110227 | 3L | 18822786..18822844 | 9..67 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:15 has no hits.
FMO06354.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:33 Download gff for
FMO06354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cat-RA | 176..1307 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:51 Download gff for
FMO06354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cat-RA | 174..1305 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:36 Download gff for
FMO06354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cat-RA | 176..1307 | 1..1125 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:36 Download gff for
FMO06354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18822779..18822842 | 1..65 | 93 | -> | Plus |
| 3L | 18826338..18827258 | 66..982 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:33 Download gff for
FMO06354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18815879..18815942 | 1..65 | 93 | -> | Plus |
| arm_3L | 18819438..18820358 | 66..982 | 99 | -> | Plus |
