FMO06356.5prime Sequence
602 bp (602 high quality bases) assembled on 2008-09-15
> FMO06356.5prime
CAGTCGACATGCAGATGCAAACGTACAAACTGGTGGTCGTCGGCGGCGGC
GGCGTGGGCAAGTCAGCGATAACGATACAGTTCATCCAGAGCTACTTCGT
CACGGACTACGATCCCACCATTGAAGACTCGTACACGAAGCAGTGCAACA
TCGACGATGTGCCAGCCAAATTGGACATTTTGGACACGGCTGGCCAGGAG
GAGTTCAGTGCCATGCGGGAGCAGTACATGCGCTCCGGCGAGGGATTCCT
GCTCGTCTTCGCGCTCAACGATCATTCCAGCTTCGATGAGATCCCCAAGT
TCCAGCGCCAGATACTGCGCGTCAAGGATCGCGACGAGTTCCCCATGCTG
ATGGTGGGTAACAAGTGCGACCTGAAGCACCAGCAGCAGGTGTCCCTGGA
GGAGGCGCAGAACACCAGCCGCAACCTGATGATCCCCTACATCGAGTGCA
GTGCCAAACTGAGGGTCAACGTCGATCAGGCCTTCCACGAGCTCGTGAGG
ATCGTGCGCAAGTTCCAGATCGCCGAGCGTCCCTTCATCGAGCAGGATTA
CAAGAAGAAGGGCAAGAGGAAGTGCTGCCTGATGGCAAGCTTTCTAGACC
AT
FMO06356.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:51:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ras64B-RA | 1620 | CG1167-RA | 104..679 | 9..584 | 2880 | 100 | Plus |
| Ras85D-RA | 1958 | CG9375-RA | 451..696 | 24..269 | 285 | 76.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:50:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4140051..4140457 | 178..584 | 2035 | 100 | Plus |
| 3L | 28110227 | 3L | 4139904..4139994 | 87..177 | 455 | 100 | Plus |
| 3L | 28110227 | 3L | 4139179..4139259 | 9..89 | 405 | 100 | Plus |
| 3R | 32079331 | 3R | 9511881..9511978 | 269..172 | 220 | 81.6 | Minus |
| 3R | 32079331 | 3R | 9512172..9512282 | 134..24 | 180 | 77.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:50:59 has no hits.
FMO06356.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:09 Download gff for
FMO06356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ras64B-RA | 97..679 | 1..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:52 Download gff for
FMO06356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ras64B-RA | 95..677 | 1..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:58 Download gff for
FMO06356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ras64B-RA | 97..679 | 1..584 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:58 Download gff for
FMO06356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4139172..4139259 | 1..89 | 95 | -> | Plus |
| 3L | 4139907..4139994 | 90..177 | 100 | -> | Plus |
| 3L | 4140051..4140457 | 178..584 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:09 Download gff for
FMO06356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4139172..4139259 | 1..89 | 95 | -> | Plus |
| arm_3L | 4139907..4139994 | 90..177 | 100 | -> | Plus |
| arm_3L | 4140051..4140457 | 178..584 | 100 | | Plus |
