FMO06357.5prime Sequence
1190 bp (1017 high quality bases) assembled on 2008-09-15
> FMO06357.5prime
CAGTCGACATGGTCAACTTCACCGTCGACGAGATCCGTGGCCTCATGGAC
AAGAAGCGGAACATCCGCAACATGTCTGTGATTGCCCACGTAGACCACGG
CAAGTCCACTCTGACCGATTCCCTTGTGTCGAAGGCTGGTATCATTGCCG
GAGCCAAGGCTGGTGAGACTCGTTTCACTGACACCCGCAAGGACGAGCAG
GAGCGCTGCATTACCATCAAGTCGACTGCCATTTCCATGTACTTTGAGGT
GGAGGAAAAGGATCTGGTGTTCATTACCCACCCCGATCAGCGCGAGAAGG
AGTGCAAGGGTTTCCTGATCAACTTGATCGACTCGCCCGGTCACGTTGAC
TTCTCCTCGGAGGTGACCGCCGCCCTTCGTGTAACCGACGGTGCACTCGT
TGTTGTAGACTGCGTCTCCGGAGTTTGTGTCCAGACCGAAACCGTGCTGC
GTCAGGCCATCGCTGAGCGTATTAAGCCCATCCTATTCATGAACAAAATG
GACCGCGCTCTGCTTGAGCTGCAACTAGATGCCGAGGAGCTGTACCAGAC
CTTCCAGCGCATCGTCGAGAACGTAAACGTTATCATTGCCACCTATAACG
ATGACGGAGGACCGATGGGTGAGGTTCGCGTGGATCCCTCTAAGGGATCA
GTGGGCTTCGGTTCTGGGCTTCACGGCTGGGCGTTCACCCTCAAGCAGTT
CTCTGAGATGTACTCCGAGAAATTCAAGATTGATGTTGTCAAGCTAATGA
ACCGATTGTGGGGTGAAAACTTCTTTAACGCCAAGACCAAGAAATGGCAG
AAACAGAAAGAGCTGACAACAAACGCTCGTTTCTGCATGTACCATCCTGG
ACCCCATCTACAAGGTGTTCGATGCCATTATGAATTACAAGAAGGAGGAG
ATAGGTACCTTGCTCGAGAAATCGGTGTGACTCTGAAGCATGAAGACAAG
GACAAAGATGGCAAAGCTTCTGCTGAAGACTGTGATGCGCACCTGGCTGC
CAGCCGGCGAGCTTACTTCAGATGATTGCTATCATTTGCCGTCGCCAGTG
TTGCCAGAAGTACCGCATGAAATGCTGTACAAGTCCCAATGACGATGAGC
GCTATCGCGGTAGTCTTGCAATCTTGAGGTCCTCTATGAAGTACTTTCAA
GAATGATACCGAACCCTTGACAGGTCGCTCCATAGCTTCG
FMO06357.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EF2-RD | 3008 | CG2238-RD | 76..1243 | 9..1162 | 5225 | 97.5 | Plus |
| EF2-RC | 2819 | CG2238-RC | 124..1291 | 9..1162 | 5225 | 97.5 | Plus |
| EF2-RA | 2771 | CG2238-RA | 76..1243 | 9..1162 | 5225 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21680757..21681284 | 754..227 | 2640 | 100 | Minus |
| 2L | 23513712 | 2L | 21679829..21680181 | 1099..754 | 1145 | 94.7 | Minus |
| 2L | 23513712 | 2L | 21681344..21681559 | 226..11 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:41:26 has no hits.
FMO06357.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:28 Download gff for
FMO06357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef2b-RA | 68..1184 | 1..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:54 Download gff for
FMO06357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef2b-RA | 102..1218 | 1..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:54 Download gff for
FMO06357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EF2-RA | 68..1184 | 1..1108 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:54 Download gff for
FMO06357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21679809..21680180 | 755..1115 | 94 | <- | Minus |
| 2L | 21680757..21681284 | 227..754 | 100 | <- | Minus |
| 2L | 21681344..21681567 | 1..226 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:28 Download gff for
FMO06357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21679809..21680180 | 755..1115 | 94 | <- | Minus |
| arm_2L | 21680757..21681284 | 227..754 | 100 | <- | Minus |
| arm_2L | 21681344..21681567 | 1..226 | 97 | | Minus |
