FMO06358.5prime Sequence
1137 bp (954 high quality bases) assembled on 2008-09-15
> FMO06358.5prime
CAGTCGACATGCTGAAGTCAACGATTGTTGATCCGCGGGTGCGCCTTGTG
CCGTCAAAGAAGCTGCTTGACTTTCTGGACGCCCAAAAGAAGCACTTAAA
GGAGTTGCCCGAAAATGTGGCCAAGATTATGAAGCAAAGAGGCCACACAC
TGCCCACCTCTATTAGGATTATCAAGGATGCGGGCTTGGAGTACAAACGA
CCAAAACTCAATTACGAGCTGTTGACAAAACTAACTGAAAACCTAGCCGA
CAAACCAGAAGAACCTGCTAAGGATAAATCGGAACCAGATTCAGGGGTCA
AGGATAGTGATGACGCAAAGTCAACAAGGGAGGTTAAACATTTCCTATAC
TTAACCGACCTGCACTGGCTCTCAAAAACACTGGCTGAACTGCGTCGTCA
GGATCACTGCCAAGTCTTTCTGCATCAGCTAATTGAGTCCTGTGATCTGC
TCCTGCCCGAAAACGAAATGAAGCCGCGCAATCCTGAGCTAGAAGCGCGC
TGCCAACGTCTTCGCGCAGAGCAACAAAATCGGGATTACCTCAAAATGAC
CAAGAATGTGGATGCCGGCTTAAAACACTATCCAGAGGACACTATCAGCT
ATCAGATTAAGAGCCTTAACAAGCAAAATCATTGCCGTGGTGCAGTTCAT
CTTCTCCGTGGCCGCTGGCTTTACGTTCGGCTTTTTCGGCGTCAATTTGA
TGGTGGGCCCGCTGCCCTTTCGGCTTTCGCATCTTGCTGGGCGTGATTGT
AGCGCTCATCATAGCCCTGGCTGAGATGTACTTCCCTGGCCAAGAAGCTG
CACGAGTACGATGAGGTCTTGACGCGCCCAAACGTTAAGCCGCAGCCATC
GACGCCGGCTAAGCGCACCCCGCCCGCCGAGGGAGTCAGTCAGACATTTG
AAACCCCTGTTGACGCAAGCTTTCTGACCATTCGTTGGCGCGCGGGCCCA
GGTAATTGTCCTAATCACAATCATAATCAATATCATAACCACCACCTACC
TAGAAGATCCTGGTCATGACTTGGCTTGATTCTCACAATAAAAACGCCCG
GCGCAACGACCGTCGAACCATCGAATGGATTCTGAGGCTATACTGGATCT
ATACAGGACTAAGCGAGCTCGATAATCAAATACCCCC
FMO06358.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7071-RC | 1766 | CG7071-RC | 785..1690 | 9..914 | 4305 | 98.9 | Plus |
| CG7071-RB | 1551 | CG7071-RB | 570..1475 | 9..914 | 4305 | 98.9 | Plus |
| CG7071-RA | 1489 | CG7071-RA | 508..1413 | 9..914 | 4305 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22363530..22364132 | 9..611 | 3000 | 99.8 | Plus |
| 3R | 32079331 | 3R | 22364197..22364471 | 607..884 | 1145 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:19:31 has no hits.
FMO06358.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:48 Download gff for
FMO06358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| muted-RA | 498..1413 | 2..914 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:52:13 Download gff for
FMO06358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34131-RA | 498..1413 | 2..914 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:58 Download gff for
FMO06358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7071-RA | 498..1413 | 2..914 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:58 Download gff for
FMO06358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22363520..22364127 | 2..606 | 99 | -> | Plus |
| 3R | 22364197..22364504 | 607..914 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:48 Download gff for
FMO06358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18189242..18189849 | 2..606 | 99 | -> | Plus |
| arm_3R | 18189919..18190226 | 607..914 | 96 | == | Plus |
