FMO06360.5prime Sequence
1008 bp (695 high quality bases) assembled on 2008-09-15
> FMO06360.5prime
CAGTCGACATGTCGCCCAACATAATAGGCAGTACCTTTATATTGGCCGAG
ACGGCCATTGCCGATGGCAACAACAACAAAATGGCTGCCACACCAGCTGC
TTCCGCCGCCCCTTCAGCAGCCACGCCCAGCCAGAAGGTGGCCAAGAAAG
CGGAGGCCAAGACGCCCGAGAACAAGCCCTACGAACTGGAGATCGTCTGG
CGCAACGTGGGACTCTTCGTCATCCTCCACTCGATGGCCCTGTACGGTCT
GTACTTGGTGTTCGCCGAGAGTGCCTATTGGGAACTCTTGCCAGTCTATG
CCACCATGTTCCTCGGCGGTCTGGGCATCACGGCCGGAGTGCATCGTCTG
TGGTCGCACAAGGCCTACAAGGCCAAGCTGCCACTGCGCATCTTCCTCAT
GCTGTGCCAGTCACTGGCCTTCCAGAACAGCATCTGGGAGTGGACCCGTG
ACCACCGCGTGCATCACAAGTTCACCGACACACACGCCGATCCCCACAAC
TCCCGACGAGGCTTCTTCTTCGCTCATATGGGCTGGCTGATGTGCAAGAA
GCACCCCGATGTGACCAGCAAGGGCAAGCAGATCTCCATGGAGGATATTG
AGCAGGATCCCGTCGTTATGTTCCAGAAGAAAATGTACTTTGTGGTTATG
CCCATCTTGCTGCTTCGCCCTGCCCATGATCTTCTCCCTACTACGTTTAT
GGGCAACTCTCTGCGCGTCTGCTTCTTCACCTGCTTCATGCTGCGCTTCT
GCCTGTCGCTGGCACTTTCACGTGGCTTGGTAAACAGCGCCCGCCCACTT
TCTACGGCATGAAGCCCTATTGATGTCAAAGTTGAGCGCCTTGAACTACC
AAGCTGGGTTCCACCCTGACCATCGGCGAAGGGATGGCCCACCTACACCA
CGTCTTCCCTGGGATATAAGGAACCCATCTGGGCACTACTGTTTCAACTT
GACAACGCCTTTATCGATGTGAGGCTAAAACGGACAAACTCTTTGCACTG
TATTTCTT
FMO06360.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8630-RA | 2173 | CG8630-RA | 373..1347 | 9..987 | 4135 | 95.9 | Plus |
| Desat1-RD | 1934 | CG5887-RD | 573..701 | 450..578 | 225 | 80.2 | Plus |
| Desat1-RB | 1978 | CG5887-RB | 617..745 | 450..578 | 225 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13282746..13283085 | 292..631 | 1700 | 100 | Plus |
| 3R | 32079331 | 3R | 13282402..13282687 | 9..294 | 1430 | 100 | Plus |
| 3R | 32079331 | 3R | 13283293..13283559 | 632..909 | 565 | 91 | Plus |
| 3R | 32079331 | 3R | 12446133..12446261 | 450..578 | 225 | 78.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:19:59 has no hits.
FMO06360.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:03 Download gff for
FMO06360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8630-RA | 373..1351 | 9..992 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:50 Download gff for
FMO06360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8630-RA | 371..1349 | 9..992 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:11 Download gff for
FMO06360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8630-RA | 373..1351 | 9..992 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:11 Download gff for
FMO06360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13282402..13282687 | 9..294 | 100 | -> | Plus |
| 3R | 13282749..13283085 | 295..631 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:03 Download gff for
FMO06360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9108124..9108409 | 9..294 | 100 | -> | Plus |
| arm_3R | 9108471..9108807 | 295..631 | 100 | -> | Plus |
