FMO06362.5prime Sequence
1155 bp (1023 high quality bases) assembled on 2008-09-15
> FMO06362.5prime
CAGTCGACATGTATCGCATCAGTCCAATTGGACGCAAATCGAACTTCCAC
TCGCGCGAAAAATGTCTGATTGGACTCGTCCTGGTAACGTTGTGCTTCCT
CTGCTTCGGCGGCATCTTCCTTCTGCCGGACAATTTCGGCAGCGATCGTG
TCCTGCGCGTCTACAAGCACTTCCGAAAGGCCGGACCGGAGATCTTTATC
CCAGCCCCGCCCCTCGCCGCACACGCCCCCCATCGCAGCGAGGATCCACA
TTTCATTGGCGATCGCCAACGTTTGGAGCAAAAGATTCGCGCCGAATTGG
GCGATATGCTCGATGAGCCACCGGCTGCGGGTGGAGGCGAACCTGGACAA
TTCCAGGTGCTCGCCCAACAGGCTCAGGCTCCAGCACCCGTCGCCGCTCT
GGCGGATCAGCCGCTGGATCAGGACGAGGGACACGCCGCCATTCCCGTTC
TGGCCGCCCCAGTTCAGGGGGACAATGCCGCCAGCCAGGCCTCGTCCCAT
CCACAAAGTTCCGCCCAGCAGCACAACCAGCAGCAACCACAACTGCCATT
GGGTGGCGGTGGCAATGATCAGGCGCCGGACACACTGGACGCCACACTGG
AAGAACGGCGTCAGAAGGTCAAAGAGATGATGGAACATGCGTGGCACAAT
TACAAAATTGTATGCGTGGGGCAAAAACGAGCTGCGTCCGCTTTCGCAGC
GACCCCATTCGGCCAGTATTTTTGGATCATACGATCTGGGTGCTACAATC
GTCGACGGTCTGGATACCCTGTACATTATGGGACTGGAGAAGGAATATCG
CCGAGGGTCGCGATTGGATCGAGCGAAAATTCTCACTGGACAATATCAGC
GCAGAGTTGAGTGTTTCGAAACGAACATTCGTTTTGTTGGGCGGCATGCT
GACGCTGTACCGCCTTTACGGGCGATCCACTGTACAGGGAGAAGGCCCAG
CACGTTGCCGACAGCTGCTGCCCGCCTTCCAAACACCAACGGGTATTCCC
TACGCGCTTGGTCACACAGACCGGTGTGGCCAGAACTACGGCTGGGCATC
CGGCGCAGTTCTATCTATTCGGATTTGCACATGCATTCTGAATTGCCTAT
CTTGAGGACATTTCCGGATTTCATGTTATCGGCACCGATCAGACCTTCCG
CCAAG
FMO06362.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Man-I-RO | 3808 | CG42275-RO | 303..1418 | 8..1117 | 5065 | 97.9 | Plus |
| alpha-Man-I-RN | 3853 | CG42275-RN | 348..1463 | 8..1117 | 5065 | 97.9 | Plus |
| alpha-Man-I-RM | 3961 | CG42275-RM | 456..1571 | 8..1117 | 5065 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10323566..10324184 | 626..8 | 3095 | 100 | Minus |
| X | 23542271 | X | 10278751..10279193 | 1065..625 | 1695 | 96.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:58 has no hits.
FMO06362.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:10 Download gff for
FMO06362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RM | 447..1532 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:23 Download gff for
FMO06362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RE | 447..1532 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:21 Download gff for
FMO06362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RM | 448..1533 | 1..1081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:21 Download gff for
FMO06362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10278691..10279191 | 627..1119 | 94 | <- | Minus |
| X | 10323566..10324192 | 1..626 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:10 Download gff for
FMO06362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10172724..10173224 | 627..1119 | 94 | <- | Minus |
| arm_X | 10217599..10218225 | 1..626 | 99 | | Minus |
