FMO06363.5prime Sequence
1164 bp (946 high quality bases) assembled on 2008-09-15
> FMO06363.5prime
CAGTCGACATGATGGCCCATGCCCAGCGGGAGATCGAGGAACGCAAGCGG
GCCCTGAGTAATCTAAGAGACAAGGATCCGCTGCTGGCGTCAGTTCCATC
GATCGGAATGCCAGTTGCCTTAGCCACTCAAGCGCTGGCGAAGAAGCCCA
CGCCCGAGGACTCGGAGAAGGCCAGGAAGATTGCCGAGTTGCAGGCACAG
ATCAGGGCCAAGCTTACTGGCAATTTGGCTAGTTTGATTCAGCCCACTGC
GGTAGCGGCCGCCGCTGCAGCTGCTGCTCAAGCGCAGGAGCGACCCAAAC
CCCTGATTCTGGACGATGAAGGACGCACTGTGGACAAGAGCGGACGTACC
ATTAATATTCCCACGGTGACACCTACATTGAAAGCCAACATACGCGCCAA
GAAACGGGAGGTGTTCCAACGCCAAACGGGTTTGGGTGAACGGAGTGAAT
CGGGCACTTCGGCCCAGGAAGAAGCTATTAAGTACTTTGACGACCGCATA
GCCCTGAAGCCCACTGTTAGAACCAAGAGGACGTTGAGATTCCACGAGCC
CGGAAAGTTCCAGCAGCTGGCCGAACGAATGCGCATGAAAAGCCAGCTGG
AGCGACTACAGAATGAGATTTCGCAAATAGCCCGGAAAACGGGCATCTCG
TCGGCCACCAAACTGGCATTGATTGCCCCCAAGCAGGACATGCCGGACGA
TGTGCCCTGCCATGGAGTGGTGGGACTCAGTTATACTGACCCAGGATCTG
GAGACGGTAGACGACGCAAGCTGTTAAGATAAGCATACGCCAAACAGCCA
TAACCCAACCTTATAGAGCATCCCCACACAAATTGAAGCCGCCCAAATGA
GCCCTTGAAACAAGTGTATCTGCCGGTTTTCCTCACAAAGAAAGAGCGCT
AAAGCTTCGTCCGCAGAACCGTCGCGAGGCTGGAAAGGAGAGCAGGAAAA
ATCCGACTGGGTTTGTGCCCCCACCAGAGCGAAACTGCGCATAATCCAAC
CTGATGCGTGTTGCTTTGCTCGAAGGCCGTACAAAATCCGAACAAAATGG
ACAACTATGTGCGCAACAGAATGTCAATCGGCGAAGGCCCTGCAAGATGC
CAACATTGCTGCAAGCTGAACCAGCGACAAAAAAGCGAAAAGAGCACGGC
AAGCTTAAAGAAAG
FMO06363.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prp3-RB | 2082 | CG7757-RB | 320..1467 | 9..1155 | 4815 | 95.7 | Plus |
| Prp3-RA | 2148 | CG7757-RA | 386..1533 | 9..1155 | 4815 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19910688..19911500 | 9..824 | 3915 | 99.5 | Plus |
| 3L | 28110227 | 3L | 19911574..19911794 | 847..1064 | 510 | 89.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:18 has no hits.
FMO06363.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:36 Download gff for
FMO06363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp3-RA | 386..1503 | 9..1127 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:02 Download gff for
FMO06363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7757-RB | 275..1392 | 9..1127 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:37 Download gff for
FMO06363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp3-RA | 386..1503 | 9..1127 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:37 Download gff for
FMO06363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19910688..19911519 | 9..846 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:36 Download gff for
FMO06363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19903788..19904619 | 9..846 | 99 | -> | Plus |
