FMO06366.5prime Sequence
788 bp (788 high quality bases) assembled on 2008-09-15
> FMO06366.5prime
CAGTCGACATGAAGACCTGGGCCTTAACTTTAGTGGTCATATTCTTGGCC
AGCTCCTGCTCGGCAGCTCCCACCACACAGAACAGGATAGAAACCGATCC
TGAACTGACAGCTGGCTATATTGAAGGCGACATGGTGCCCAGTCCGGAGG
GAAGGAACGGACTTCGCAATGAAACCTTCAGATGGCCAAACCGCATTGTC
TATTATTACATCAATCGCGATATTGACACCGAGCATCGCAACCATATTCT
AAGAGGTATTCGCATAATAGAACAAAGTTCTTGCTTGGTCTTCAAGGAGG
CCACCACTGATCAGGAATATTATGTGAATGTTACCTCGGAGGCTGGAGGA
TGTTACTCGTATGTTGGCTATCGCAACCGGGTTCAGCAGCTGAATCTGCA
GACCTACGCTCTGGACACCGGCTGCTTCCGTCTGGGAACAATTGTCCACG
AGTTCCTGCATGCCCTTGGCTTCTATCACCAGCAAAGCACCTGGAATCGC
GATGACTATGTCCGAATTGCTGAGGAAAACATAACTGAGGGCACTGAGGG
CAACTTCAACAAGTACGACAATGAAACCGTCGAGGACTACGGAGAACCCT
ATGATTACTCCAGTGTACTACACTACACCGCTTATGCGTTCTCTAAAAAC
GGAGAGATGACCATTGTGCCGCTACAGGAAGGTGCCGAAGAACTTATGGG
GCAGCGATTGCAAATGACCCAGTCGGATATTAACAAACTTAACGTCATGT
ACAAGTGCCCCAGGCAGGTGGCAAGCTTTCTAGACCAT
FMO06366.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15254-RB | 868 | CG15254-RB | 36..799 | 7..770 | 3820 | 100 | Plus |
| CG15254-RA | 825 | CG15254-RA | 36..799 | 7..770 | 3820 | 100 | Plus |
| CG15253-RA | 942 | CG15253-RA | 89..547 | 85..543 | 440 | 73.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15613974..15614519 | 770..225 | 2730 | 100 | Minus |
| 2L | 23513712 | 2L | 15614575..15614793 | 225..7 | 1095 | 100 | Minus |
| 2L | 23513712 | 2L | 15616205..15616263 | 143..85 | 205 | 89.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:20:45 has no hits.
FMO06366.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:07 Download gff for
FMO06366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15254-RA | 31..802 | 1..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:05 Download gff for
FMO06366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15254-RA | 27..798 | 1..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:32 Download gff for
FMO06366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15254-RA | 31..802 | 1..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:32 Download gff for
FMO06366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15613971..15614518 | 226..774 | 99 | <- | Minus |
| 2L | 15614575..15614798 | 1..225 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:07 Download gff for
FMO06366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15613971..15614518 | 226..774 | 99 | <- | Minus |
| arm_2L | 15614575..15614798 | 1..225 | 99 | | Minus |
