FMO06367.5prime Sequence
1158 bp (1037 high quality bases) assembled on 2008-09-15
> FMO06367.5prime
CAGTCGACCATGCAAATAATTGGGAATTGTAGCAGTAAACTGCTCAGACA
CAAGTACCTGTGCCAGCCAAGGGTGTACTCTCTATACTACAGTACCCTTA
AAGATGCGGCTAATGAGCTTCCCTTGGCAGCAGGATACCAGCCACAACCA
GTGGAAAATGCTTACTGGGAGCGGGAGCATCGCCAGGCAAATTTGCCCAA
GGCTTCAGCCAGCAGTTGCAAGCGGGGGACCTATCGCATGCTTCTACCGC
CACCAAATGTAACCGGGAATCTACATTTGGGCCATGCACTGATGGCCACC
GTGCAGGATGTGATTGCCCGCCAGCGCGAACAGCTTGGCTACCAGGTGGA
CTGGGTACCAGGCACAGATCACGCGGGTATCGCCACCCAGGTGGTCGTAG
AGCGCACGATTGCCGCTTCTCAGGCGAAAACCCGTCATGAATTGGGACGT
TCTGCTTTTCTGGACGAAGTATGGCGCTGGAAGGCGGAAAAGGGTGCTGG
TATCGTACAGGATCTCCGCCAACTCGGCTGTAAACTGAATTGGCAACGAG
AATACTTCACAATGGATGAGCAGCAGGCGCATGCGGTCAACGTAGCTTTC
GAGCGACTCTTTGAAGAAGGCCTAATTCAGCGGCGCAACTCGGTTGTCAA
CTGGTGCACCGCTCTACGTTCCGCGATATCTGATATCGAGGTGGACAGTG
TAGAGATCACGGAGCCGGTAGAGATATCCGTTCCAGGCTACGATCACAAA
GTACTCTTTGGCAGAATGTACGATTTCGCCTATCACGTAGTGGATGGTGA
AGCACTGCCCGATGGTTCGGTTGAAGAGATTGTGGTGTCTACCACTAGAC
CAGAGACATTTTGGGTGATGTAGCTGTCGCAGTACATCCGCTGGATCCGC
GCTACGCCAAGTACCGAAACATTGATCAGGTTAGCTCAAGCATCCTTTCC
GTGACGACACATTCCACTCGTTTCGATATCACGTGACCAGGAGTTTGGCA
CGGGGCAGTGAAATCACACCAGCCATGACAATTTGATTCAGCTGCCCTCG
CCATAGCTGAACCTCGCCAGTCTTTACTGAACCGGCCTGGGGGGATGCCT
ATTCTGGATCAGTATCCGGCTCAAGGCCGAAATCCATCGTCATGCCTGAA
GATGAATG
FMO06367.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:51:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5660-RB | 3254 | CG5660-RB | 144..1260 | 10..1106 | 5050 | 97.9 | Plus |
| CG5660-RA | 3148 | CG5660-RA | 38..1154 | 10..1106 | 5050 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:51:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8963536..8964466 | 1024..102 | 4260 | 98.9 | Minus |
| 3L | 28110227 | 3L | 8964528..8964626 | 108..10 | 480 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:51:09 has no hits.
FMO06367.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:13 Download gff for
FMO06367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5660-RA | 38..1158 | 10..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:07 Download gff for
FMO06367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5660-RA | 38..1158 | 10..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:02 Download gff for
FMO06367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5660-RA | 38..1158 | 10..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:02 Download gff for
FMO06367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8963438..8964464 | 104..1114 | 97 | <- | Minus |
| 3L | 8964533..8964626 | 10..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:13 Download gff for
FMO06367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8956538..8957564 | 104..1114 | 97 | <- | Minus |
| arm_3L | 8957633..8957726 | 10..103 | 100 | | Minus |
