FMO06368.5prime Sequence
1125 bp (856 high quality bases) assembled on 2008-09-15
> FMO06368.5prime
CAGTCGACATGACAATGTCCTCGACGTCGACAGCGACTGCGACGTCCACA
GCGACTGCGACGCTGGACGAGGCGAACGCCACTGTTGGCGAAATGTTTTC
GGATGCGGATATGGCGGAAGTGCGGCATGTTGTCCAACGCATTTTGGTGC
CGTGCGTTTTTGTTATTGGACTATTGGGAAATTCAGTGAGCATTTATGTT
TTGACGCGAAAGCGCATGAGATGCACGACGAACATATATCTAACGGCACT
GGCCATTACGGATATTGCCTACCTGACGTGCCAGTTAATCCTGTCACTCC
AGCACTATGACTATCCCAAGTATCATTTCAAGCTCTACTGGCAGCTCTAT
GGCTATTTTGTCTGGCTGTGCGACAGTTTCGGTTACATCTCAATTTACAT
AGCCGTGTGCTTCACCATCGAAAGATTCATTGCGATACGCTATCCGCTCA
AGAGGCAAACATTCTGCACGGAATCGCTGGCCAAAAAGGTGATAGCAGCG
GTGGCCATCTTCTGTTTGCTGTCCACACTATCGACGGCATTCAAGCATAC
AATTACGATTGGTACTAAGCAGATTGATGACGCCTACCAGCCGTGCAACC
AAACGGTGGCCAACATCTCGCCCATGCCGCCGCCACCCGTGGCAGTCACG
CCCCCCACTGGCCACGCCCCCGCTGCCCACGCCGGCGACCATTTGGCAAT
CGCCGGACTCCGCCATGGAGTCCACGACGTCCGGCAGCTCTAAATCAGCT
CGTCGACTGGGGCAGTGGCAGTGGTGATGGAGAGCCAAAGAACATCCCCC
GACATCGCCGTCACTGGCAAGTCATCTGGATTTGTGACCCTGCCCACACT
GAGAAAAACGCTGGAGGAGCAGATCAGAAGTGCCAGACGCGGCCCAGAGG
TCAAGGGTCACATAAGTTGCTGCATTTGTGGCGTCCCATGCGCACGCTGA
AAATCACAACATCACAATACGGATGCATCCATTAACGAACGGAATACGCC
AAATGGGACCTATACAATCATGTCTTTCGGACTGGGCTATGAAGGAGCTT
AAGCTATCTGTGGAACCTGTTCACCCTGGTGGCTTCGTGGATATCCCCTA
CCTCTATGGCCCACTGTCCAATCCA
FMO06368.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Proc-R-RE | 2784 | CG6986-RE | 453..1574 | 8..1114 | 4695 | 95.8 | Plus |
| Proc-R-RD | 3005 | CG6986-RD | 674..1795 | 8..1114 | 4695 | 95.8 | Plus |
| Proc-R-RC | 2672 | CG6986-RC | 341..1462 | 8..1114 | 4695 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4726424..4726713 | 496..787 | 1330 | 98.6 | Plus |
| X | 23542271 | X | 4723367..4723567 | 8..208 | 990 | 99.5 | Plus |
| X | 23542271 | X | 4725021..4725196 | 208..383 | 880 | 100 | Plus |
| X | 23542271 | X | 4726235..4726352 | 381..498 | 575 | 99.2 | Plus |
| X | 23542271 | X | 4726875..4727069 | 789..978 | 485 | 90.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:48:27 has no hits.
FMO06368.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:47 Download gff for
FMO06368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Proc-R-RB | 626..1738 | 1..1101 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:08 Download gff for
FMO06368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6986-RC | 335..1447 | 1..1101 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:42 Download gff for
FMO06368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Proc-R-RC | 337..1449 | 1..1101 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:42 Download gff for
FMO06368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4726427..4726714 | 499..788 | 98 | -> | Plus |
| X | 4726236..4726352 | 382..498 | 99 | -> | Plus |
| X | 4723363..4723567 | 1..208 | 98 | -> | Plus |
| X | 4725022..4725194 | 209..381 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:47 Download gff for
FMO06368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4617396..4617600 | 1..208 | 98 | -> | Plus |
| arm_X | 4619055..4619227 | 209..381 | 100 | -> | Plus |
| arm_X | 4620269..4620385 | 382..498 | 99 | -> | Plus |
| arm_X | 4620460..4620747 | 499..788 | 98 | -> | Plus |
