FMO06369.5prime Sequence
1140 bp (919 high quality bases) assembled on 2008-09-15
> FMO06369.5prime
CAGTCGACATGTACGAACCGGGTACGAGCAGCGAGGAGGGTGTTGTATCT
GAGACTGAGCCCGAGCCAGCAGGAGTATCTGTATCTGTATCTGTATCTGT
ATCTGAGGAGCCATCGGCGAGCCGCTCCAGCCGGCTGACCGTCATTACCG
TGGTCGTGGTCGTCGTCGCCGTTCGCGCCATGAGTCGTCTGAGGCGTGAA
AGCAGCCGACAAAGCGTCATCACCGTCGAGCTGATACAGTTCATCATTCA
GTATCGCGCCAAGGAGACGCAGGAGAAGAAGAAAAGGCGCCTGGCCGACG
AGGACGATGAGCTGTCGGAGGTGCAGCCGGATGCAGTGCCGCCGGAGGTG
CGCGAGTGGCTGGCCTCCACCTTCACCCGCCAGATGGCCACCAGCCGGCG
CAAGAGCGACGAGAAGCCCAAGTTCCGTTCGGTGGCCCACGCCATCCGTG
CTGGCATCTTTGTGGACCGCATGTATCGCCGCGTCTCCAGCTCGGCCCTA
ACGGCCTTCCCACCGGACGTGGTCAGGCTGCTCAAGAACCTGGACGACTG
GACCTTCGATGTGTTCGCCCTGACGGAGGCAGCCAGCGGCCAGGTGGTCA
AGTACGTGGCCTATGAGCTCTTCAACCGCTACGGCTCGATTCACAAGTTC
AAGATTGCGCCGGGAATTCTGGAGGCGTTCCTGCATCGCGTGGAGGAGGG
CTACTGCCGGGTATCGGAACCTGTATCATAACAATCTGCACGCCGTGGAC
GTGATGCAGACGATCCACTACTGCCTTGTGCAACCGGGTCTGATGAACTG
GGCTGACGGACCTGGAGATCTTTGCCTCGCTGCTGGCCGCCCTGCTCCAC
GAATACGAGCACAACCGGCACCACCATAACTTTCATGTGATGTCGGGTTC
GGAAACGGCCCTGCTGTACAAGATCGGGCTGTGCTGAAAAATCATCATGG
CCACGCCCGTTCCCGGTTGCTGCGCGAGGATGAGTCAACTACTGTGCCAT
TGTCGCGCGAGAAGTTTCGCGAAATGGCGGGCTGTTATCATATTGTACTC
GGCAACGATAGTAACAATCATTTCAGCAAATGAAGGCCATGCGCAAAGCG
TGCTGAACGCTCGAGAGACCAACATGACAAGACGAAAAGG
FMO06369.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pde1c-RC | 4561 | CG44007-RC | 341..1433 | 8..1094 | 4715 | 96.3 | Plus |
| Pde1c-RL | 4894 | CG44007-RL | 1718..2540 | 278..1094 | 3335 | 94.8 | Plus |
| Pde1c-RJ | 5321 | CG44007-RJ | 2145..2967 | 278..1094 | 3335 | 94.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11817930..11818495 | 1094..535 | 1730 | 92.6 | Minus |
| 2L | 23513712 | 2L | 11821006..11821285 | 287..8 | 1400 | 100 | Minus |
| 2L | 23513712 | 2L | 11818600..11818851 | 536..285 | 1260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:50:36 has no hits.
FMO06369.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:16 Download gff for
FMO06369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde1c-RC | 336..1346 | 1..1011 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:10 Download gff for
FMO06369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde1c-RC | 336..1346 | 1..1011 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:39 Download gff for
FMO06369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde1c-RC | 336..1346 | 1..1011 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:39 Download gff for
FMO06369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11821007..11821289 | 1..286 | 98 | | Minus |
| 2L | 11818017..11818493 | 537..1011 | 94 | <- | Minus |
| 2L | 11818600..11818849 | 287..536 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:16 Download gff for
FMO06369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11818017..11818493 | 537..1011 | 94 | <- | Minus |
| arm_2L | 11818600..11818849 | 287..536 | 100 | <- | Minus |
| arm_2L | 11821007..11821289 | 1..286 | 98 | | Minus |
