FMO06371.5prime Sequence
604 bp (-76 high quality bases) assembled on 2008-09-15
> FMO06371.5prime
AAAAACGAAGTTATCAGTCGACATGAGTAACCTAAAGCATATTACGCTGG
AAATGGATAAAGTGCCACTAGGAGATAATAAAACTTTGGAAAATATCAAC
AAACACAGCTATGGCGGTGCAATCGACGGACGGACACGTAATACTCTTCG
AGTGCCCAGAGCAGTTCCAGAAACCGATGATGATGACAACGACGATCGTC
CCTTTGTTAAAGATGGCAATGATAATCCCGGCGTGGATGACGGTCTTTTT
TCAACTGTTGGAGGCAACGGAGGCAACGGCGGCAATGTGAATGTAAACGT
TCCCAATGGAGGAAGACGACCCATTTTCTCCTTTCCGGGATACAATGGAC
CCGGTTTTGTGACGATCAACTGCGTGGAGACACCCATACCCGATGTGAAT
GCATATCAGCACAAGAAGACCCTGGCTCAGGGAATGATGGACCTGGCACT
TCTCTCCGCGAATGCAAATCAATTGCGTTATGTTCTGGAGACGAGCTCAC
AACATCCTTACTTTTATCCCAGTCTGCTGTTCATCTCACTCAGCATTATA
TTCCAGATTGCTGTGGGCGTGGGCCTTATATTGAATGGCCAGTATAACAT
CAAA
FMO06371.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NijA-RA | 1134 | CG6449-RA | 234..815 | 23..604 | 2835 | 99.1 | Plus |
| NijA-RB | 1146 | CG6449-RB | 234..827 | 23..604 | 2705 | 97.1 | Plus |
| NijA-RD | 1086 | CG6449-RD | 374..767 | 211..604 | 1940 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10695024..10695417 | 556..163 | 1925 | 99.2 | Minus |
| 3L | 28110227 | 3L | 10695629..10695705 | 164..88 | 370 | 98.7 | Minus |
| 3L | 28110227 | 3L | 10696578..10696644 | 89..23 | 320 | 98.5 | Minus |
| 3L | 28110227 | 3L | 10694679..10694733 | 604..550 | 260 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:31:22 has no hits.
FMO06371.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:53 Download gff for
FMO06371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NijA-RA | 226..812 | 13..601 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:56 Download gff for
FMO06371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NijA-RA | 223..809 | 13..601 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:53 Download gff for
FMO06371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NijA-RA | 226..812 | 13..601 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:53 Download gff for
FMO06371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10694682..10694726 | 557..601 | 100 | <- | Minus |
| 3L | 10695024..10695415 | 165..556 | 99 | <- | Minus |
| 3L | 10695629..10695704 | 89..164 | 98 | <- | Minus |
| 3L | 10696579..10696639 | 28..88 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:53 Download gff for
FMO06371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10687782..10687826 | 557..601 | 100 | <- | Minus |
| arm_3L | 10688124..10688515 | 165..556 | 99 | <- | Minus |
| arm_3L | 10688729..10688804 | 89..164 | 98 | <- | Minus |
| arm_3L | 10689679..10689739 | 28..88 | 98 | <- | Minus |
