FMO06372.5prime Sequence
611 bp (-68 high quality bases) assembled on 2008-09-15
> FMO06372.5prime
AAAAACGAAGTTATCAGTCGACATGAAATTCAATTTGGTGCATACACTGG
TCTTCACTTTGTGCCTCATCAGCGTGCAAATATATGGCATTCAAGATGCC
AGTGGCAAGCGGATCGTTAGCAAGTACGAGCGCATCATGCAGATGTATCC
GCAGCTCTCCTCCGGCGCAGGCGAATCCTCGCAGTGGCGGGCGGCCGAGA
AGGACAACCAGCGGCATCCTTGCAGACGCGACTGCGCCGACAAGCAGCCG
ATGACCTGCTACTACTACATGGTGGTCCACTACGACGACACGATGGCGGA
GACCTGCAAGCGCTACCTCCAGTCCAAATTCCGCTTCAAGCTGAGCGGCA
AGGAGTACATCGATGGGATTGCGCTGGCAACGCAGCTGGCGGCGAACGAC
GACTGCAAGTACGCCGATGGACTGGAGAGCGAGGTGATGGTGGTCAATGG
CCAGCTGCCGGGGATGAACATCGAGGTGTGCTACGGCGACACCGTGGTGG
CGGACGTGATCAACAGCATGCACGAGACGACGACGATCCACTGGCACGGG
ATGCACCAGCGACTAACGCCCTTCATGGACGGAGTGCCCCACGTCACCCA
GTATCCAATTC
FMO06372.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32557-RA | 2131 | CG32557-RA | 122..709 | 22..609 | 2925 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17854451..17854741 | 609..319 | 1455 | 100 | Minus |
| X | 23542271 | X | 17855226..17855454 | 322..94 | 1145 | 100 | Minus |
| X | 23542271 | X | 17855931..17856008 | 99..22 | 360 | 97.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:47:51 has no hits.
FMO06372.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:34 Download gff for
FMO06372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32557-RA | 115..710 | 13..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:00:58 Download gff for
FMO06372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32557-RA | 109..704 | 13..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:24 Download gff for
FMO06372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32557-RA | 115..710 | 13..611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:24 Download gff for
FMO06372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17854450..17854737 | 323..611 | 99 | <- | Minus |
| X | 17855226..17855452 | 96..322 | 100 | <- | Minus |
| X | 17855935..17856015 | 13..95 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:34 Download gff for
FMO06372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17748483..17748770 | 323..611 | 99 | <- | Minus |
| arm_X | 17749259..17749485 | 96..322 | 100 | <- | Minus |
| arm_X | 17749968..17750048 | 13..95 | 94 | | Minus |
