FMO06374.5prime Sequence
1156 bp (1050 high quality bases) assembled on 2008-09-15
> FMO06374.5prime
CAGTCGACATGGCCAAAATGCCGGAGACAACGTTTGCCGACCTGAGTCTG
GCTGATAAGACTGCTGTGAAGAAGTCAAGTATTGAAGCTCGGCGGTTTTC
TGATGTGTCCACCTGCTCATTCAGTTCCACCTGTTTCACCGGAAGCTCCG
ACGAGGAAGACGTCTCCCCGAAGGACAACCATCAGCGCAACTCCGCCGGA
GGCACTGACTTTTGCGTGAAGAGCATCTCGAAGAGTGCATTTGGAAGGCG
GGAGATCGAGATCGCCGAGTCGGAGATGCCGGGCATCATGACTCTGAGGA
AAAGAGCGAAGGATGAGAAGCCCCTAAAGGGTGCCAATATCGTCGGATGC
ACCCACGTCAATGCTCAGTCGGCAGTGCTGATCGAGACCCTCGTCCAACT
GGGCGCCACAGTTCGCTGGGCTGCCTGCAACATTTATTCCACACAAAACG
CAGTTGCCGCCGCTCTGGCAGAGGCGGGAATTCCGATCTTCGCCTGGCGC
GGAGAGACGGAGGAGGAGTTCTGGTGGTGCTTGGACAGGGCCATCTACTC
CGACGGCTGGCAGCCGAACCTAATCCTGGACGACGGCGGCGATGCCACGC
ACCTTATGCTCAAGAAGTACCCCGACTACTTCAAGGCCATTCGGGGCATC
GTGGAGGAAAGTGTGACCGGGGTGCACCGGCTGTACATGCTGTCAAAGGG
CGGAAAACTTACTGTTCCGGCCATCAACGTTAACGACTCAGTGACCAAGA
ACAAGTTTGATACTTTCTACACGTGTCGTGACTCCATCCTGGACAGTCTG
AAACGCACCACGGATATAATGTTTGGCGGAAAGCAGGTGGTGATCTGTGG
GTACGGTGATGTGGGAAAGGGCTGTGCTCAGTCCCTGAAGGGCCAAGGAT
GCATTGTTTATGTTACGGAAGTGGATCCCATATGTGCTCTACAAGCTGCC
ATGGATGGATTCCGGGTGGTACGGCTCACGAGTTCATCAGGACGTGGATG
GTGTGGTACGCACTGGAAACAAAATTGTTATTTACAGGGATCACATGAAT
CGCATGAGAATGGTGTATCTCTGCAATATGGGCACTCTTGCTCGAAATGA
TTGAATGTGTACCGATGAGCTCAGTATGCAGATGCGAGATGCTCTGGTCA
TGATCG
FMO06374.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:51:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ahcy89E-RD | 1969 | CG8956-RD | 347..1441 | 9..1094 | 5115 | 98.4 | Plus |
| Ahcy89E-RC | 1780 | CG8956-RC | 224..1318 | 9..1094 | 5115 | 98.4 | Plus |
| CG9977-RA | 3020 | CG9977-RA | 848..1582 | 236..970 | 1065 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16979477..16980143 | 796..130 | 3335 | 100 | Minus |
| 3R | 32079331 | 3R | 16979140..16979408 | 1057..794 | 1010 | 95.2 | Minus |
| 3L | 28110227 | 3L | 2770046..2770491 | 892..447 | 625 | 76 | Minus |
| 3L | 28110227 | 3L | 2771272..2771478 | 442..236 | 375 | 78.7 | Minus |
| 3R | 32079331 | 3R | 16980294..16980365 | 129..58 | 360 | 100 | Minus |
| 3R | 32079331 | 3R | 16981639..16981689 | 59..9 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:51:19 has no hits.
FMO06374.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:19 Download gff for
FMO06374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ahcy89E-RC | 220..1318 | 1..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:18 Download gff for
FMO06374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ahcy89E-RD | 368..1466 | 1..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:07 Download gff for
FMO06374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ahcy89E-RC | 220..1318 | 1..1094 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:07 Download gff for
FMO06374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16979099..16979405 | 797..1094 | 94 | <- | Minus |
| 3R | 16979477..16980143 | 130..796 | 100 | <- | Minus |
| 3R | 16980294..16980363 | 60..129 | 100 | <- | Minus |
| 3R | 16981639..16981693 | 1..59 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:19 Download gff for
FMO06374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12804821..12805127 | 797..1094 | 94 | <- | Minus |
| arm_3R | 12805199..12805865 | 130..796 | 100 | <- | Minus |
| arm_3R | 12806016..12806085 | 60..129 | 100 | <- | Minus |
| arm_3R | 12807361..12807415 | 1..59 | 93 | | Minus |
