FMO06375.5prime Sequence
1155 bp (957 high quality bases) assembled on 2008-09-15
> FMO06375.5prime
CAGTCGACATGAATTTAACAAAATCACCTACGTTAGCTGCTGCGATTTTT
TGTATCGTTTTGAGCCAAGTTTCTGGGCAGACGAAAGATGAAACCACCAC
AACCGAGACGCCAAAGGAAAAAATCAAAGTAATTGATAGCAAATTGTGTA
AGAAGTGCAATTGCTATATCGACACCAATTTGCTGGATTGCTCCGAAAAA
CTGCAGGATTGGTTGTCCGCCGAGGACTGGGAGGATCTGACCAACGGCAA
TGTTGTGTTCAAAACAATCAATCTGGAGCACAACAATCTGACCAGCGTGC
CAATTCTGCCGAAATACGATGTGGAGAACTTGTACTTGGCTAACAACCAA
ATCGATTCAATTTCCGTGGGAGCTTTTCAGAATTTAACCGAACTAGTCAC
ACTCGATTTGTCGCATAACCGATTGACTTCGAAAGTTCTGGTACCGGATG
TTTTTAAAGGACCCTTCACTGTCCAAGATTTTGAGTCATTGGAAAATCTA
AAGACTCTTAACTTGGGATACAACGATCTGCATAGCTTGGATGCGGATCT
GTTTGAACACATTCCCCACATTGAGGAACTCGTTCTCTGCTCAAATAGTT
TTCATGTCATCGATCAACTTTCAGAAACAGCCATTTCCGGCTTACAATCG
TTGAAGATCTTGGATGTCTCTTATATGGAAATCGATGACTTGCCGGATAC
AATTCTACATGGTCCCCGAGATCTTGAGATCTTTATAGCAGCTGGCAATC
TGTTTAATCAATTTGCCAAAGGCCCTGAAATATGCGACGAACTTGACCAG
CCTGGTCTTAAACGAAAATCCCATCGAAAATTTGATGGGCGACAATGTAT
TTCCACCTTTGACCAAATTGACCCACCTCAGCATGACTTTTATGTCCAAG
TTGTACAAAATTGGGCCAGGAGCATTTATGGACTGCAAGTTTAACTGAAC
TGATATTGTCCAACACAAACTGCTAATTGAAATTGATGGAGAAGCTTTTA
TCAAGACCGTACTGGCGACAGTATTGGACTACCCGCCTTGGAAAAGTTTA
CTTGAATATTGCACGTGCGACTTTGCCAAAAGACATCTATGTGGCCTGGA
TAACTTAAGGCTTCTTGAATCTCTAACTCCACCCGTGAATTGCAGAATCA
TGACT
FMO06375.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5096-RA | 1649 | CG5096-RA | 78..1162 | 9..1083 | 4890 | 97.5 | Plus |
| gny-RA | 2557 | CG5091-RA | 2033..2141 | 9..117 | 530 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10383005..10383546 | 115..656 | 2710 | 100 | Plus |
| 2L | 23513712 | 2L | 10383605..10383801 | 648..845 | 895 | 98 | Plus |
| 2L | 23513712 | 2L | 10382340..10382448 | 9..117 | 530 | 99.1 | Plus |
| 2L | 23513712 | 2L | 10383867..10383949 | 846..928 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:04:09 has no hits.
FMO06375.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:16 Download gff for
FMO06375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5096-RA | 72..1166 | 2..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:19 Download gff for
FMO06375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5096-RA | 82..1176 | 2..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:26 Download gff for
FMO06375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5096-RA | 72..1166 | 2..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:26 Download gff for
FMO06375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10382334..10382447 | 2..116 | 95 | -> | Plus |
| 2L | 10383007..10383546 | 117..656 | 100 | -> | Plus |
| 2L | 10383614..10383801 | 657..845 | 98 | -> | Plus |
| 2L | 10383867..10383961 | 846..938 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:16 Download gff for
FMO06375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10382334..10382447 | 2..116 | 95 | -> | Plus |
| arm_2L | 10383007..10383546 | 117..656 | 100 | -> | Plus |
| arm_2L | 10383614..10383801 | 657..845 | 98 | -> | Plus |
| arm_2L | 10383867..10383961 | 846..938 | 96 | -> | Plus |
