FMO06376.5prime Sequence
1186 bp (1048 high quality bases) assembled on 2008-09-15
> FMO06376.5prime
CAGTCGACATGGCAGCGGTGCAGCAGCAGCAGCACCACCAGCGGCAGTTG
CTGCACCACCAGCACTCCCATCCGCCCTTCCAAGCCACCCAGCAGCACCA
GCCCGCGCAGCAGCAGCAGCAGCAGCAGCATCAAACGGTGCAGCAGCAGC
AGCAACAGCAGCAGCAGCGCTTGCACCACTCGCACCACCCACCGCTGCAG
CACCACCTGTCGCTGGGTGGCTACCAGCAACTGCAGCTGCAGATGCAGGC
CAACAGGAATCAGTACTCCACGCCGCAGCATCACTATCGCAATGCAACCA
ATGCTGCAGCGGCCGCAGCTGCAACATCGGCGAATGCTGCCACCATTAGA
CGCCGCACCTTGAGTCACGTATCGCGCTCTTACTCCCTGGGCACAGCGGC
GGCCAACGCAGCAGCAGCCGCAGCAGCAGCAGCAGCAACAGCAGCGGCCA
CAACTGCAGCAGCCACAACTGCAACATCATCGGCCAGTAGCAACAATCAA
CTGAGTATCCACAAAACTGGGATCATGGTCGCCGCCTCACGATGTCGAAG
TCCCATAATGCTGTGCCACAGTCACAGCGACGGCGAGTTTCCACTGTACC
GAGCTAAGAAACAGAATGGAGCTGCCATACGCACAAATAGCCTGGGTTCG
GGCACTAGGACGCCACCTTTGGAAAGGAAGAGCAAACTCAGTGCCCTGGG
CAGATTCTTTAAGCCCTGGAAATGGCGACGGAAAAAGAAGAGCGAGAAGT
TCGAGGCGGCCTCCAAATCCCTGGAGCGTAAGATTTCTGTGCGTGCCAAT
CGTGATGAGCTAGTGCAAAAGGGGATTCTAATGCCTGAGAGTCCCCTGGG
CAATATTCCAGAACAGGCGAGGAAGTCGTATTATAACAACAGCAATAGTG
GAGCCACCGCGAATGGATCCCTGCTCAACTCAGCCGTCCACAATAAATCC
ATGAGCCAGGCCAATAATTCCATAAAATGCACCACCGGCATTCTGCTCAT
CTCCCGCCGCCCAACAGCAGCTGACCAGGGACTTCCCAACTCGATCTCCG
TGCAGCAGTTCAACGGTCAACAGATCCACAGAATTCCATGGTCAATGCCT
ATGTGCGGCGACGGAGTGAAACGGGTCCTGGACCGTCTCTCCTCAGGGGC
GCGTTTCCACCTGCAGTCGCGCCCCCGACCCAATGG
FMO06376.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32264-RM | 3767 | CG32264-RM | 809..1991 | 9..1175 | 5175 | 96.9 | Plus |
| CG32264-RI | 3797 | CG32264-RI | 809..1991 | 9..1175 | 5175 | 96.9 | Plus |
| CG32264-RL | 2798 | CG32264-RL | 432..1022 | 601..1175 | 2215 | 93.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3799886..3800480 | 603..9 | 2975 | 100 | Minus |
| 3L | 28110227 | 3L | 3769242..3769408 | 768..602 | 835 | 100 | Minus |
| 3L | 28110227 | 3L | 3767335..3767562 | 1097..874 | 785 | 92.6 | Minus |
| 3L | 28110227 | 3L | 3769081..3769176 | 864..769 | 480 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:42:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3239..3322 | 393..479 | 184 | 71.3 | Plus |
FMO06376.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:47 Download gff for
FMO06376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-RI | 800..1911 | 1..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:22 Download gff for
FMO06376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-RA | 800..1911 | 1..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:27 Download gff for
FMO06376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-RI | 800..1911 | 1..1108 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:27 Download gff for
FMO06376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3767325..3767568 | 867..1108 | 93 | <- | Minus |
| 3L | 3769078..3769176 | 769..866 | 98 | <- | Minus |
| 3L | 3769242..3769406 | 604..768 | 100 | <- | Minus |
| 3L | 3799886..3800487 | 1..603 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:47 Download gff for
FMO06376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3767325..3767568 | 867..1108 | 93 | <- | Minus |
| arm_3L | 3769078..3769176 | 769..866 | 98 | <- | Minus |
| arm_3L | 3769242..3769406 | 604..768 | 100 | <- | Minus |
| arm_3L | 3799886..3800487 | 1..603 | 99 | | Minus |
