FMO06377.5prime Sequence
689 bp (-69 high quality bases) assembled on 2008-09-15
> FMO06377.5prime
CCCTTATACCAAGTTATCAGTCGACATGTGGGCTCCCGGCGGGTAAGTTA
AATCAATAGTGGTGCTGGCGGCACTGACGGCGCTTCTCTGGGCCCCACTT
GAGGTCCTTGGGCGGAAGCACCATCTGGAAGTGAGGAATGACCGTCGCCA
GTACATCGCACTCAGCACCTTTGGATTCTACACTAATGGCCATTTGGATG
TGCAGCTCAGCAAATTGACTTTTGACAATGAGCAGTCTACAGATTTGATG
GGTCTGTCGCTGGATAAGACCACTATTGACCAGCTTAATCCCTATTTGGA
CTCGCATCAAAACAAATGCATTCTCGAGGAATCACCTAAATCCCAGATCA
GCGGACCCATTCTCTTCTTCGTGCTGGACCTCAAGGAGCTTAAAGTTCGT
GTTAAGTGCTCCCCCGAATGGCACAATATGCACATCTACAACCAAATCCC
GTCCAGAACCAAGCGGCACTCACACATGGCCAAGGTCAGCGATTCGGTTC
TGTTTCACCAGACCCGCGCTGCCCATGATTTCTCCGCCGAGGGGCCAGAT
GAGTCCATGGAGGATCCCTTGGAGCAAAACCGACGGATTTAAAGTCTTCC
TCGCCTGCTGCGGTTGCAGGCAAAATTGAGCTGCCCAAAGATGAAGGTGC
ACCCAATGTATATGCTCCTGCCCAAAATGTTGATGCTGT
FMO06377.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12121-RA | 2954 | CG12121-RA | 266..930 | 26..689 | 3210 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9231262..9231558 | 689..394 | 1375 | 98.3 | Minus |
| X | 23542271 | X | 9231621..9231767 | 393..247 | 735 | 100 | Minus |
| X | 23542271 | X | 9231828..9231939 | 247..136 | 560 | 100 | Minus |
| X | 23542271 | X | 9232003..9232113 | 136..26 | 525 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:08:29 has no hits.
FMO06377.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:18 Download gff for
FMO06377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12121-RA | 266..930 | 26..689 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:23 Download gff for
FMO06377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12121-RA | 261..925 | 26..689 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:30 Download gff for
FMO06377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12121-RA | 266..930 | 26..689 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:30 Download gff for
FMO06377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9231262..9231558 | 394..689 | 98 | <- | Minus |
| X | 9231621..9231766 | 248..393 | 100 | <- | Minus |
| X | 9231828..9231938 | 137..247 | 100 | <- | Minus |
| X | 9232003..9232113 | 26..136 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:18 Download gff for
FMO06377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9126036..9126146 | 26..136 | 98 | | Minus |
| arm_X | 9125295..9125591 | 394..689 | 98 | <- | Minus |
| arm_X | 9125654..9125799 | 248..393 | 100 | <- | Minus |
| arm_X | 9125861..9125971 | 137..247 | 100 | <- | Minus |
