FMO06378.5prime Sequence
1127 bp (955 high quality bases) assembled on 2008-09-15
> FMO06378.5prime
CAGTCGACATGGCCGCTGAAAGGCAGGAGAAACGAGGCGAGGAGGAGACG
CAGCCCAGGTTGCCCGACCTCGGCTTTGTGCGCGACAAGCTTCAGAAGTT
CCAGTCCAAGATGCTGACCGACTTCGAGCAGCGGCTGTCCTGCATGGTAG
AGGATGTGCTGCAGGATCTGCGACAGCGCGAGTTGCGTGCCCACGAGTTC
CCCAACTTCGAGAGATCCGATCGGAAGAGCACCTGGCACAATCGCGTGAC
CAGTCAAGCGCCAGCAGACGTCAGCGACTCCACAAATGGCCATGCAAATG
GCACGCATCCAAGGCCACCGATCCAAAGCGAAACATCCGCTCGTAAGCAG
CGACGACAACTGCCCGAAAAAGTGTTCGTTGCCCGGGAATCGTACCTCAC
CGCTCTGCTGCAGGTGGAGCACATGCGCACCATCTACCACATCTTTTATA
TTATTCTGGTCATGTTCCTGCTGAACGTGATCTGCTACGATTACTTTGTT
GATGGCCGCTTCGATCTGGGACTTGGCACCTTCCGCGGCGGACTGCGCCG
CCTCCACTGGGTGATGGGCGTTTGGCTGCTGGAGCATGTCTTCGTCCTGG
CGCTCTATTTCGCCTTCCGCGGATGGGCCTTGGTCAGGCACAAACTGAAA
CCGCACAGTTCTCTCCAGCGCTTTTGGTCGCACAGCTGTCTCATCCTGTA
CATCAGCTCCCAGCTGGTCTTCTGTTTCGTGTCGACTTCGCTGTGCCTCA
AGTTCAACCTGCCCTTTGTGAGTGCGTGTATCCTGTTGCTCGAGAGCACG
CGACTGCTGATGAAGATGCACGCCTTTGTGAGTACAATGCTGACCGCGTT
CTGATGGCAAAGCCAGAAAGAAGATGCGGAGAGGAGAAGAAGGCCATGAG
CGACCGTTTGTGCCGCCGCCTGACTGTTACACGTACTTTTGGTTTGCACC
CACGCTTATCTACCGAAGAAGCTACCCCGCCCACCTCCCACATCCGCTGG
AGTTTGCCCTGAATCGATTGTTGGAGGTGGTGCCCATGCCTTCCTGTACC
GTTCATCTTGACGGCCATTCCCGAGCCTTCGACGTACGACTGACCATGGG
AACCCTCCAGCTGATCCCAGGCTGTTC
FMO06378.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8112-RB | 1956 | CG8112-RB | 187..1326 | 6..1127 | 4870 | 96.5 | Plus |
| Cks85A-RC | 2904 | CG9790-RC | 2038..2691 | 659..6 | 3270 | 100 | Minus |
| CG8112-RD | 2129 | CG8112-RD | 187..840 | 6..659 | 3270 | 100 | Plus |
| Cks85A-RC | 2904 | CG9790-RC | 1177..1664 | 1127..658 | 1610 | 91.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8713119..8713772 | 6..659 | 3270 | 100 | Plus |
| 3R | 32079331 | 3R | 8714146..8714543 | 658..1049 | 1340 | 93.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:39:19 has no hits.
FMO06378.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:26 Download gff for
FMO06378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RB | 185..1259 | 1..1068 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:25 Download gff for
FMO06378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RA | 321..1395 | 1..1068 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:46 Download gff for
FMO06378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RB | 185..1259 | 1..1068 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:46 Download gff for
FMO06378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8713117..8713770 | 1..657 | 99 | -> | Plus |
| 3R | 8714146..8714566 | 658..1068 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:26 Download gff for
FMO06378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4538839..4539492 | 1..657 | 99 | -> | Plus |
| arm_3R | 4539868..4540288 | 658..1068 | 93 | | Plus |
